Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67620 66 / 3e-12 unknown protein AT5G62900 44 / 7e-05 unknown protein AT5G03100 44 / 0.0001 F-box/RNI-like superfamily protein (.1) AT5G02920 44 / 0.0002 F-box/RNI-like superfamily protein (.1) AT5G53840 44 / 0.0002 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 43 / 0.0005 F-box/RNI-like superfamily protein (.1) AT3G59150 43 / 0.0005 F-box/RNI-like superfamily protein (.1) AT5G02910 43 / 0.0005 F-box/RNI-like superfamily protein (.1.2) AT5G50090 41 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019266 [exp] 401 / 1e-136 ND / Lus10030905 [exp] 257 / 2e-77 ND 40 / 0.005 Lus10019264 [exp] 171 / 2e-49 AT5G67620 163 / 5e-51 unknown protein Lus10017218 [exp] 115 / 1e-27 AT4G14103 45 / 5e-05 F-box/RNI-like superfamily protein (.1.2) Lus10029083 [exp] 96 / 1e-20 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10030519 [exp] 91 / 1e-20 ND / Lus10003696 [exp] 76 / 3e-15 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034290 [exp] 77 / 1e-14 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10037289 [exp] 71 / 9e-13 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G005600 [exp] 69 / 3e-13 AT5G67620 184 / 7e-60 unknown protein Potri.012G077300 [exp] 45 / 5e-05 AT5G50090 168 / 1e-53 unknown protein Potri.001G337200 [exp] 45 / 0.0001 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.017G146300 [exp] 43 / 0.0007 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011549 pacid=23140442 polypeptide=Lus10011549 locus=Lus10011549.g ID=Lus10011549.BGIv1.0 annot-version=v1.0 ATGGAGAAATCGAAGAGCAGTGGCAATGATACAAAGAAGAGGAAGAAGCATACTAACAATCTGCCGCCACCGCCATTAGAGCTCAAGGGAAATGACTTCA TCTCCAATCTCCCGCCGGAAATCATTCACAACATTCTCCGATGCCTAGACTCTCCATCTGAGGCGGCGAGAACATCCATACTCTCAAAAGCATGGAACCA TGACTTCTGGCGATCTTACCCTGTGGTAGAGTATCGCGATTCCGAGATCCATTCCCCTTCCAAGTTTCGCAGCTTCGTTGCCTCCTCTTCCAGAAGGCTG CTCGGAGACTTCCTCCACAATCGGACTCCATTATCCGCTCTAAGGATCTCGCTGGTAGAGATCCCAGCACAGGACCAGCTCGACGAGCTACTGATCGGTT CCGCGGCGTCGCTGCTGGCGGCAAGTTGCGGCTCGCCTCGCGAGATCTCGATCGAGATCAACGGAAGCCTCCGCGGCTACAATCTTCCCCGAGCGGCGTT CCGGAATTGCAGCCGCACAACGGTGATTAGTCTTATAGGCTTCAACTTGGCAGAGTTCGGTAACAGTTTCTGGGCTGATCATTTCCCTAATCTTGAATCG TTGTGTTTGCAAGATGATTTTCTTCTCTATCTTTCGGTAGATGCAGATCCCGATTACATTAAATTTCTGGTTCGCTCTGGCCTTGGCCAAGGACCAATCC ACCTTACTGCTGTTCCACTCATGTTGAAGAATCTGGAACTAAGAGGTGCCATTAAGCTCAAGGCTGCAGCTCCAAACCTCAAATCGGTAGCATTTCATAA CAACGGCCAGGTAACGCAGCAGGACCTTGATGAGTTCACTTCCCTTTTGCCAGCTCTCAAGTCTCTTTCGTTCCGGAACTTGGATTTTGAAAGTAGGGAG TTGAGGCTGAAGATCTCTTCCCCTCGGTCCAAACTTCGTATGTTCAGTTTAACAAATTCGCGAGGTTGGAAGCCACTGCAGGAGATAGTAATTGATGCTC CTGAACTGGCTACTTTCGTCTACGATCGTGGTGGTAGCTTCAGTCCACCGGTTCCCAATGTTAATGTCGTCAATGTCGCTTCTGATTTTCGATTCATAGT AGTTGCGGATGGGAACGACTGTTACGAATGCTTCACGTATGAATGGCATGCTGAGTTGAGGCTGTTCCTCGAAACACTTAGAAGCCAATTCCATGGCAGC CTGGTTCTGAAGTTGCAGGGGCTGGAGGAGTATCTCTCATGCCGTGGCGAGATACAATCTAAGGTGCCATGGAACGAGATAACTAGTCGAGATTTGGTAG ATGTTAATCATTTGGAACTGGATGTGGGTTCCTGGATCAACTTTAGATTTAGTCGGAACAGTTATCTTCTCGATGGTTGTTTTTCGATGTGTCGTCCTGG ATCCATGTCGGTTTTCCAAAGTGGCCCTGTAAAGCCAAGTAGGAGAACCCATTTTGTCGAGGCCTGGGTCCCGCCGCCTCCGACGGAGGCGAACGGGCAG TCTCCGGCGGCGAAGCAGGTGCTGAAGCTTCTGAAACCGGACGACACCCTTCTCATCGGCCAGGTCTACCGTCTGATCAGCTTCGAAGATGTGCTGAAGG AGTTTGCTACCAAGAAGAGCGTGAAACTGGGGAAGCTTCTGAAAGAGAGAGGCGGCGGCGGAACGACGGCGGGGGTAGGGGGAGGAGGATTGGGATCGGA GATCAAGAGGATGAAGAACTCCGGCGAAGAATGGGGTAGCTCTGGTGCTGATACGGAGGAGGTTAACCAACAACTGCAACTGGGAATCAGCAGTAGCAGC AGCTTTAATGGAGCAGGAGGAAGTAGCAGCAGAGTGGTTCGAAGACAGCATTATTATAACTATGGAGGAGGGCAATGGAGGCCAGCTTTACAGAGCATTT CAGAGATCGCTTAA
AA sequence Show only first row Show all	>Lus10011549 pacid=23140442 polypeptide=Lus10011549 locus=Lus10011549.g ID=Lus10011549.BGIv1.0 annot-version=v1.0 MEKSKSSGNDTKKRKKHTNNLPPPPLELKGNDFISNLPPEIIHNILRCLDSPSEAARTSILSKAWNHDFWRSYPVVEYRDSEIHSPSKFRSFVASSSRRL LGDFLHNRTPLSALRISLVEIPAQDQLDELLIGSAASLLAASCGSPREISIEINGSLRGYNLPRAAFRNCSRTTVISLIGFNLAEFGNSFWADHFPNLES LCLQDDFLLYLSVDADPDYIKFLVRSGLGQGPIHLTAVPLMLKNLELRGAIKLKAAAPNLKSVAFHNNGQVTQQDLDEFTSLLPALKSLSFRNLDFESRE LRLKISSPRSKLRMFSLTNSRGWKPLQEIVIDAPELATFVYDRGGSFSPPVPNVNVVNVASDFRFIVVADGNDCYECFTYEWHAELRLFLETLRSQFHGS LVLKLQGLEEYLSCRGEIQSKVPWNEITSRDLVDVNHLELDVGSWINFRFSRNSYLLDGCFSMCRPGSMSVFQSGPVKPSRRTHFVEAWVPPPPTEANGQ SPAAKQVLKLLKPDDTLLIGQVYRLISFEDVLKEFATKKSVKLGKLLKERGGGGTTAGVGGGGLGSEIKRMKNSGEEWGSSGADTEEVNQQLQLGISSSS SFNGAGGSSSRVVRRQHYYNYGGGQWRPALQSISEIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67620			unknown protein		Lus10011549 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Lus10035789 [exp]	5.3	0.7709
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	6.1	0.8110
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	6.3	0.8001
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	8.2	0.7928
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	14.0	0.7399
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	15.5	0.7115
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022689 [exp]	15.9	0.7418
AT5G18610			Protein kinase superfamily pro...		Lus10015051 [exp]	17.7	0.7069
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	22.2	0.7055
AT3G28430			unknown protein		Lus10011235 [exp]	22.5	0.7943

Compare expression of checked genes

Lus10011549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.