Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22900 542 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 527 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT5G07720 325 / 3e-107 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 320 / 6e-105 XXT5 xyloglucan xylosyltransferase 5 (.1) AT3G62720 312 / 4e-102 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT1G18690 313 / 9e-102 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G02500 305 / 2e-99 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT4G38310 161 / 3e-48 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019265 [exp] 827 / 0 AT2G22900 557 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 323 / 5e-106 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 321 / 5e-106 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019076 [exp] 320 / 1e-105 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 319 / 2e-104 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10002870 [exp] 311 / 2e-101 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037519 [exp] 310 / 2e-101 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 308 / 2e-100 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 273 / 2e-87 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006100 [exp] 681 / 0 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 666 / 0 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.015G061800 [exp] 319 / 7e-105 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 315 / 2e-103 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.008G208000 [exp] 308 / 2e-100 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 307 / 3e-100 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.010G025300 [exp] 306 / 1e-99 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10011550 pacid=23140410 polypeptide=Lus10011550 locus=Lus10011550.g ID=Lus10011550.BGIv1.0 annot-version=v1.0 ATGTCTCTTAGAAAACAGCCGGAGATTCCTGCTCACTACTCACCCATGGCGAAATCCTCCTCCGCTTCAGCCAGAAACAAGCAGTCCAACGACGGCTGCC TCTACATCGGAGGAGCTCTCTTCGCCTTCTTGCTCTTCTGGTGCCTCTGGTCCTACGCCGGCCCTTCCGGAGACGAATCCGGATCCAATTTCATCCCTAG AGTTTTCAGCGATATCGGATCGGACCGCTGCTCCAACCCGGCTCCCAACCTCCGTTTCGACCCGCCGGATACCACCTTCTACGACGACCCGGAGATCCGG TATTCAATCGACAAGAAGGTCACCGGATGGGACGAGAAGCGGAAAGAATGGCTCAAGAAGCATCCGACGTTCGCGGCGGGGAGTAGACGGCGTGTTGTGA TGGTCACTGGTTCTCAGCCGAAGCCGTGCAGCAATCCGATCGGCGACCATCTCCTCCTCCGCGCGTTTAAGAATAAGGTTGATTACTGCCGGATCCATGG ATATGATATATTTTACAACAATGTGCTTCTTCATCCGAAGATGCCGAGCTTCTGGGCGAAGCTTCCTGTGGTGAAGGCAGCGATGGTTGCACATCCGGAA GCCGAGTGGATCTGGTGGGTCGACTCGGACGCGTTGATCACCGACATGGAATTCAATCTTCCGTTGGAGCGTTACGATTACAAATCTCATAATCTGGTCG TCCATGGATGGGAGAAGCTGATCTACAAGGAGAAATCGTGGACATCGTTGAACGCCGGAGTGTTTCTTATTCGTAACTGTCAATGGTCGATGGATTTCAT CGACGTTTGGGCCAATATGGGTCCAAAGAGTCCGGATTTCAAAAAATGGGGAGAGATCCAACGGTCGTTGTTCAAGGACAAGCTGTTCCCGGAATCGGAC GATCAATCGGCGTTGATCTACTTGCTCCTGAGAGAAAAGAAATTGATGGAGAAGATCTACTTGGAAGGAGCGTACTATTTCGAAGGGTACTGGGTGGAGA TTGTGCCGACGTACGACAACATAACGGAGAAGTACACGGCGATCGAGAGGGAAGACGGGAAGCTACGCCGACGGCATGCTGAGAAAGTGAGTGAACAGTA CGCTGCGTTTCGGGAGCCGTACCTGAAAGAAGCCGGAGGAGGGCGGGGGAGCTGGCGGCGGCCGTTTATAACGCATTTCACTGGGTGTCAGCCGTGTAGC GGTGATCATAACCAGATTTACGCCGGCGAGAGCTGCTGGAACGGGATGGTGAAGGCTTTGAATTTTGCGGATAATCAGGTGCTGAGGAAGTATGGGTTTG TTCATCCCGATTTGCTGGATTCTGCCACGGTGACGGAGACGGCGTTTGATTACCCCGACGAGGGACCTTGGTGA
AA sequence Show only first row Show all	>Lus10011550 pacid=23140410 polypeptide=Lus10011550 locus=Lus10011550.g ID=Lus10011550.BGIv1.0 annot-version=v1.0 MSLRKQPEIPAHYSPMAKSSSASARNKQSNDGCLYIGGALFAFLLFWCLWSYAGPSGDESGSNFIPRVFSDIGSDRCSNPAPNLRFDPPDTTFYDDPEIR YSIDKKVTGWDEKRKEWLKKHPTFAAGSRRRVVMVTGSQPKPCSNPIGDHLLLRAFKNKVDYCRIHGYDIFYNNVLLHPKMPSFWAKLPVVKAAMVAHPE AEWIWWVDSDALITDMEFNLPLERYDYKSHNLVVHGWEKLIYKEKSWTSLNAGVFLIRNCQWSMDFIDVWANMGPKSPDFKKWGEIQRSLFKDKLFPESD DQSALIYLLLREKKLMEKIYLEGAYYFEGYWVEIVPTYDNITEKYTAIEREDGKLRRRHAEKVSEQYAAFREPYLKEAGGGRGSWRRPFITHFTGCQPCS GDHNQIYAGESCWNGMVKALNFADNQVLRKYGFVHPDLLDSATVTETAFDYPDEGPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22900			Galactosyl transferase GMA12/M...		Lus10011550 [exp]	0	1
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	1.7	0.8988
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	4.6	0.8689
AT3G28720			unknown protein		Lus10033020 [exp]	4.9	0.8914
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	5.3	0.8941
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	6.9	0.8842
AT3G06150			unknown protein		Lus10034027 [exp]	7.3	0.8635
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	8.5	0.8617
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	10.7	0.8731
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	11.6	0.8741
AT5G64970			Mitochondrial substrate carrie...		Lus10026043 [exp]	12.6	0.8630

Compare expression of checked genes

Lus10011550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.