Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67630 732 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49830 656 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22330 317 / 1e-103 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019267 [exp] 828 / 0 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011283 [exp] 291 / 2e-91 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040479 [exp] 280 / 5e-89 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096800 [exp] 779 / 0 AT5G67630 764 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G118900 [exp] 764 / 0 AT5G67630 758 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G199100 [exp] 310 / 4e-101 AT5G22330 788 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G160600 [exp] 310 / 4e-101 AT5G22330 812 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06068 [flax] [poplar] TIP49 TIP49 P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10011551 pacid=23140439 polypeptide=Lus10011551 locus=Lus10011551.g ID=Lus10011551.BGIv1.0 annot-version=v1.0 ATGGCGGAGCTCAGAATCTCTTCCGAAACCCGGGACCTAACCCGGATAGAAAGGATAGGTGCTCACTCCCACATCCGTGGCCTCGGCCTCGACTCCACCC TCGAGCCCCGCGCCGTCTCCGAAGGCATGGTGGGCCAAACCTCCGCCCGGAAAGCCGCCGGTGTCATCCTCCAGATGATTAAGGACGGTAAAATCGCTGG ACGAGCAGTTCTAATCGCCGGCCAGCCTGGGACCGGAAAGACAGCAATCGCGATGGGGATGGCGAAATCCCTAGGTCTGGAAACCCCATTCGCCATGATA TCAGGTAGCGAGATCTTCTCGTTGGAGATGTCCAAGACCGAGGCACTGATGCAGTCGCTGAGGAAGGCTATTGGAGTGAGAATCAAGGAAGAGACGGAGA TAATCGAAGGAGAAGTGGTTGAGGTTCAGATCGACAGGCCGGCGGTGGCTGGCGCGGCGTCGAAGACGGGGAAGTTGACGCTGAAGACGACGGAGATGGA GACTGTTTATGAGCTTGGGGCGAAGATGATTGAGGCCTTGGGGAAGGAGAAAGTGCAGAGTGGGGATGTTGTAGCCATTGATAAGGCTTCTGGTAAGATT ACCAAGCTTGGGAGGTCGTTCTCGAGGTCGAGGGATTACGATGCTATGGGGCCTCAGGTGAAGTTTGTACAGTGTCCTGACGGTGAGCTTCAGAAGAGGA AAGAAGTCGTGCATTGTGTTACTCTGCATGAGATTGATGTCATCAATAGCAGAACACAGGGATTTCTGGCTTTGTTCACAGGCGATACAGGTGAAATTCG TGCTGAAGTCAGAGAGCAAATCGACACAAAGGTCGCGGAATGGAGGGAAGAAGGGAAAGCAGAGATAGTCCCCGGCGTCCTGTTCATAGACGAAGTCCAC ATGCTCGACATTGAGTGCTTCTCTTTCCTCAACCGTGCACTCGAGAACGAGATGTCTCCCATCCTAGTCGTTGCCACCAACCGAGGAATCACAACAATCC GAGGCACCAACTACAAATCCCCCCACGGAATCCCCATCGATTTGCTCGACCGGTTGCTCATCATCGCCACTCAGCCCTACACTAAGGACGAAATCCGCCA AATACTAGACATCAGAGCCCAAGAAGAAGAAGTGGAGATGGCCGAGGAGGCGAAGGCTCTCCTCACACATATCGGCGTGGAGACTTCGTTGAGGTACGCC ATCCACCTCATCACTTCGGCGGCCTTGGCATGCCAGAAGCGGAAAGGGAAGCTCGTCGAGAGCGAGGATGTCACCCGAGTTTACAATCTTTTCCTCGACG TGAAGAGATCTGCTCAGTACTTGATGGAGTATCAGAACGAGTACATGTTCAACGAAGCACCCGTTGCAGATGCTGAAGATGATGATGCTACTGCTATGGT CCCTTGA
AA sequence Show only first row Show all	>Lus10011551 pacid=23140439 polypeptide=Lus10011551 locus=Lus10011551.g ID=Lus10011551.BGIv1.0 annot-version=v1.0 MAELRISSETRDLTRIERIGAHSHIRGLGLDSTLEPRAVSEGMVGQTSARKAAGVILQMIKDGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMI SGSEIFSLEMSKTEALMQSLRKAIGVRIKEETEIIEGEVVEVQIDRPAVAGAASKTGKLTLKTTEMETVYELGAKMIEALGKEKVQSGDVVAIDKASGKI TKLGRSFSRSRDYDAMGPQVKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVH MLDIECFSFLNRALENEMSPILVVATNRGITTIRGTNYKSPHGIPIDLLDRLLIIATQPYTKDEIRQILDIRAQEEEVEMAEEAKALLTHIGVETSLRYA IHLITSAALACQKRKGKLVESEDVTRVYNLFLDVKRSAQYLMEYQNEYMFNEAPVADAEDDDATAMVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	0	1
AT5G67630			P-loop containing nucleoside t...		Lus10019267 [exp]	1.0	0.9494
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	2.4	0.8778
AT1G61170			unknown protein		Lus10018461 [exp]	2.8	0.9076
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	3.2	0.8893
AT5G60030			unknown protein		Lus10023334 [exp]	3.3	0.8675
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	3.7	0.8777
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	4.5	0.8696
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	4.9	0.9063
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	7.7	0.9011
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	9.7	0.8510

Compare expression of checked genes

Lus10011551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.