Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019268 [exp] 93 / 5e-24 AT5G67640 72 / 1e-14 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011552 pacid=23140420 polypeptide=Lus10011552 locus=Lus10011552.g ID=Lus10011552.BGIv1.0 annot-version=v1.0 ATGAGCGGCTCGTCGTCCTCGGCGAGCGACACGGATGGAGGCAGTCGGAAGTTGAGTAGGGCTCAAAGGAAGAGGCCGAGGAAGAAGAGGATTAAGGAGG ATGCTTGCTGTCGGAAGGAGATAATTGGGCCGTTGCTACCACCAGCTGGTGCTGGAGAAGGAGAGTGCAGTCGAGGTGTTCGACAAAATGCCGATGAGAC TGGCCAAGGCAGCAATGATGCAGGTGTTGGTGCGAGCAGGATGAACCAGCGTAGGAAGGCAAAGAAGCTGGCCAAGGAGAAGCTGAAACCAGACATGATC AAGGTGTCGGCTGATGATGAGAAATGTTAA
AA sequence Show only first row Show all	>Lus10011552 pacid=23140420 polypeptide=Lus10011552 locus=Lus10011552.g ID=Lus10011552.BGIv1.0 annot-version=v1.0 MSGSSSSASDTDGGSRKLSRAQRKRPRKKRIKEDACCRKEIIGPLLPPAGAGEGECSRGVRQNADETGQGSNDAGVGASRMNQRRKAKKLAKEKLKPDMI KVSADDEKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67640			unknown protein		Lus10011552 [exp]	0	1
					Lus10011553 [exp]	1.0	0.9633
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	4.0	0.9297
AT1G30190			unknown protein		Lus10023301 [exp]	4.5	0.9357
					Lus10031407 [exp]	7.7	0.9327
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	8.0	0.9347
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	8.5	0.9353
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	9.1	0.8940
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	12.0	0.9320
					Lus10031026 [exp]	12.4	0.9209
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10040674 [exp]	17.5	0.9140

Compare expression of checked genes

Lus10011552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.