Plant FIBer expression Database

Lus10011553 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65925 46 / 5e-07 unknown protein
AT4G37700 44 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011707
[exp]
75 / 6e-18 AT4G37700 45 / 2e-06 unknown protein
Lus10025207
[exp]
69 / 3e-15 AT4G37700 56 / 4e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G006300
[exp]
72 / 6e-17 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1)
Potri.007G006100
[exp]
59 / 7e-12 AT1G58420 68 / 1e-14 Uncharacterised conserved protein UCP031279 (.1)
Potri.009G086000
[exp]
47 / 3e-07 ND /
Potri.009G085900
[exp]
39 / 0.0004 ND /
PFAM info
Representative CDS sequence
>Lus10011553 pacid=23140443 polypeptide=Lus10011553 locus=Lus10011553.g ID=Lus10011553.BGIv1.0 annot-version=v1.0
ATGGGGACGTCGACGAACCAATCCTCGGAGAAGGAAAGCAGAGTGAAGAAGATCCTGAAATCCCCTTTCAGATTCATGGTCAAAGCCAGGGACTTTTACG
TCGACGGGATGACGCAGCTCTCCGACAAGGTCGCACAGTACGACGCCATTTCCACCCTCCCCAGGAGTTTCAGCGTTTCCGGCGGAACGGCTGGCTCCGA
CTACAGGGAGTTAGTCAGGGGTAATTTGGAGAACAGAGTTCTTGCTCGGGACCTGACGACGAAGAAGAAGAAGCAGAAGTTGTTGAAAAGTAAGAGCGTT
GGGCTTGGAAGGATCGAGGAAGATAAGTCGTGTCATTTCGGTGAAGATTCTGTGAGTAATTTTAGTCATGGTGGTGGTTAA
AA sequence
>Lus10011553 pacid=23140443 polypeptide=Lus10011553 locus=Lus10011553.g ID=Lus10011553.BGIv1.0 annot-version=v1.0
MGTSTNQSSEKESRVKKILKSPFRFMVKARDFYVDGMTQLSDKVAQYDAISTLPRSFSVSGGTAGSDYRELVRGNLENRVLARDLTTKKKKQKLLKSKSV
GLGRIEEDKSCHFGEDSVSNFSHGGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011553
[exp]
0 1
AT5G67640 unknown protein Lus10011552
[exp]
1.0 0.9633
Lus10031407
[exp]
1.4 0.9545
AT2G16720 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAI... Lus10033473
[exp]
3.0 0.9494
AT4G23990 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE... Lus10032415
[exp]
8.1 0.9235
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Lus10031609
[exp]
8.1 0.9022
AT5G10530 Concanavalin A-like lectin pro... Lus10029555
[exp]
8.5 0.9178
AT4G23100 ATECS1, CAD2, G... ROOT MERISTEMLESS 1, PHYTOALEX... Lus10002001
[exp]
8.5 0.9262
AT3G22600 Bifunctional inhibitor/lipid-t... Lus10022066
[exp]
9.6 0.9426
AT1G08080 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANH... Lus10014412
[exp]
10.5 0.9243
AT4G02830 unknown protein Lus10042573
[exp]
11.0 0.9346

Lus10011553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.