Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03280 434 / 2e-149 Transcription factor TFIIE, alpha subunit (.1) AT4G20340 361 / 7e-121 Transcription factor TFIIE, alpha subunit (.1) AT4G20810 326 / 5e-108 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019269 [exp] 775 / 0 AT1G03280 505 / 3e-177 Transcription factor TFIIE, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G051000 [exp] 543 / 0 AT1G03280 498 / 1e-174 Transcription factor TFIIE, alpha subunit (.1) Potri.010G102000 [exp] 456 / 8e-158 AT1G03280 484 / 7e-169 Transcription factor TFIIE, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02002 [flax] [poplar] TFIIE_alpha TFIIE alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10011554 pacid=23140380 polypeptide=Lus10011554 locus=Lus10011554.g ID=Lus10011554.BGIv1.0 annot-version=v1.0 ATGATGAGCCTTGAACCTTGGAACAGGCTAGTGAAGCTTGCGGCTAGAGCATTTTATGATGACTACACGACAAAAGGGGATAATCAGCCGAAGATTGCAC GTAGTGATAATAGAGGAATGGCTGTCGTCATCCTTGATGCTTTAACTAGACGTCAGTGGGTTCGAGAAGAGGATTTGGCCAAGGATTTGAAAATGCATAC AAAGCAAATTCGGCGTACTTTGCGCTTCTTTGAAGAAGAAAAGTTGGTCACCCGTGATCAGAGAAAGGAGACGGCCAAAGGTGCAAAGCAATATAGTGCT GCAGTAGCTGCTACTACTGAAATTCAAAATGGGAAGGAAGGGGAAGATAAGGTTAAGCTGCTCCTTCACACATATTGTTGCCTGGACTATGCACAGATAT ACGATGTTGTTCGTTACAGATTGCATCGTTTGAAGAAGAAGCTGAGGGATGAGCTGGAAGAAAAAAACACAATTCAGGAGTATGTGTGCCCCAACTGCGG AAAAAGATACAATGCCCTAGACGCACTGCAGTTGGTCTCCATGGTGGATGAATATTTCCATTGTGAGAATTGCAACGGTGAACTTGTGGCAGAGAATGAC AAGTTAAATGTTGCCGATGGAGATACGGATGACAATACAAGGAGGAGACGTCGTGAAAAGCTGAAAGACTTGCTACAGAAAATGGAGACTCAGCTTAAGC CACTGACAGAGCAGCTAAACAGAGTGAAAGACTTGCAGATTCCCGATTTTGGAAATCTCCTCGCATGGGAAGCTCGAGCAATTGCTGCTGGCCGTGACTT AAATGGTTCCAGTTCCAATGATCCTTCAAAGGCGACTCAGGGATATGGAACACCACTACCGTATCTCGGGGAGACTAAGGTCGAGGTTGCCTTCTCTGGT GCGGATGGCAAGGAAGAGGATATTAAACCTGACAATGCGGGCTCGGGGCTTAAAGTGTTGCCACCATGGATGATCAAACAAGGAATGAACCTCACAAAGG AGCAGCGAGGAGAGATAAAGCATGAGTCTAAGATGGATGGCGATTCATCATCTTCAGCCTACTCGGATGACAAGAAATCTGCCGTTGTAGATGAAAAACA GAGCATACAGGACGAATACGTGAAAGCTTACTATGCTGCCATCTTAAAGCAACAAGAAGAGCTGGAAGCCGCAAGGAAGCAAGAAGAGTTGCGAGTTGCT CCTAATTTGAACGCGCCCCCACCGGAATCCTCACCTGAACGTCAAGTTGGGATGAAGTCCAAACGCGAGGAAGACGACGAAGAAGATGATGACTGGGAGG ATGGAGGAGGCAACGGCTCTAGTGAAGGTTACAGGCTGAATGATCTGAACGAAGAAGCGAAAGCTACACCAGAGGACGAAGACGACGATATCGATTGGGA AGAGGGCTAA
AA sequence Show only first row Show all	>Lus10011554 pacid=23140380 polypeptide=Lus10011554 locus=Lus10011554.g ID=Lus10011554.BGIv1.0 annot-version=v1.0 MMSLEPWNRLVKLAARAFYDDYTTKGDNQPKIARSDNRGMAVVILDALTRRQWVREEDLAKDLKMHTKQIRRTLRFFEEEKLVTRDQRKETAKGAKQYSA AVAATTEIQNGKEGEDKVKLLLHTYCCLDYAQIYDVVRYRLHRLKKKLRDELEEKNTIQEYVCPNCGKRYNALDALQLVSMVDEYFHCENCNGELVAEND KLNVADGDTDDNTRRRRREKLKDLLQKMETQLKPLTEQLNRVKDLQIPDFGNLLAWEARAIAAGRDLNGSSSNDPSKATQGYGTPLPYLGETKVEVAFSG ADGKEEDIKPDNAGSGLKVLPPWMIKQGMNLTKEQRGEIKHESKMDGDSSSSAYSDDKKSAVVDEKQSIQDEYVKAYYAAILKQQEELEAARKQEELRVA PNLNAPPPESSPERQVGMKSKREEDDEEDDDWEDGGGNGSSEGYRLNDLNEEAKATPEDEDDDIDWEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	0	1
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	2.0	0.9168
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	4.2	0.9064
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	7.5	0.9037
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	7.5	0.9134
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	9.6	0.8775
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10017002 [exp]	13.0	0.8966
AT1G26665			Mediator complex, subunit Med1...		Lus10024211 [exp]	14.1	0.8926
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10035631 [exp]	14.1	0.8689
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	14.4	0.8955
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	19.5	0.8740

Compare expression of checked genes

Lus10011554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.