Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65910 321 / 5e-106 BSD domain-containing protein (.1) AT3G49800 310 / 8e-102 BSD domain-containing protein (.1) AT1G10720 167 / 5e-47 BSD domain-containing protein (.1) AT2G10950 107 / 1e-25 BSD domain-containing protein (.1) AT3G24820 53 / 5e-08 BSD domain-containing protein (.1) AT1G26300 52 / 2e-07 BSD domain-containing protein (.1.2) AT1G69030 47 / 2e-05 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019271 [exp] 632 / 0 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1) Lus10027706 [exp] 100 / 2e-23 AT2G10950 147 / 9e-42 BSD domain-containing protein (.1) Lus10039982 [exp] 101 / 3e-23 AT2G10950 156 / 2e-44 BSD domain-containing protein (.1) Lus10036831 [exp] 45 / 6e-05 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10019194 [exp] 44 / 0.0001 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2) Lus10038170 [exp] 43 / 0.0002 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1) Lus10025929 [exp] 43 / 0.0002 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G008400 [exp] 342 / 3e-113 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.007G006400 [exp] 338 / 5e-113 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 223 / 8e-68 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1) Potri.018G125400 [exp] 135 / 9e-36 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.T125207 [exp] 135 / 9e-36 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.006G065200 [exp] 134 / 4e-35 AT2G10950 193 / 1e-58 BSD domain-containing protein (.1) Potri.010G137900 [exp] 53 / 2e-07 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.008G111900 [exp] 48 / 5e-06 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.002G242200 [exp] 45 / 2e-05 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10011556 pacid=23140429 polypeptide=Lus10011556 locus=Lus10011556.g ID=Lus10011556.BGIv1.0 annot-version=v1.0 ATGTCGTGGCTAGCAAGGTCTATCGCCAACTCTCTCAAGCTCGACGATGACGATGCTGACGGTAACGACGACCATAACGACTCCAAATCACCCCCGACTG AAGAGCCTGATCAACATTCGCCGTCGTCAGCTACCAGTTCCACCGCCACTCCTCGTGGCGTAAAGGAAGACATCTCCGAGCTCACCAAGACCCTAAGCCG CCAGTTCTGGGGCGTCGCCTCGTTCCTCGCTCCTCCGCCCGAATCGTCCTCACCTCCTGGTCAGATCTCCGAGGAATCTGCTAAGGAGACGGAGAATCGG CAGCTGTTGGACCCGGACGAGACCGATGATGCTTTGATTGAAGGAATACGGAGCGATTTCGCGGAAATTGGTGGGAGATTCAAGTCCGGGATCTCGAAGC TGTCGAGTAACAAGGCGGTGTCTGAGATCACGAAGATCGCGTCGAACTTCCTGCAATTTGCGTCGGAGGGAGATGTGAACGACGAGGATTTGATCGGGAC TGCTGTCGGTGTGACCGAGGAGGCTGTTGCTTTCGCGAGGGATGTATCTATGCATCCCGAGACTTGGCTCGACTTCCCCGTTCCTGAAGTGGACGATTTT GAGGAGGATTTTGACATGTCCGATGCCCAGCAGGAGCATGCATTAACTGTTGAACGCCTAGCCCCAAGGCTAGCTGCTTTGCGAATTGAACTCTGTCCAG GTTATATGAGTGAGGGATGCTTTTGGAAGATTTACTTTGTCCTTCTGCACCCTAGACTTAGTAAAGAAGACGCTCTGCTGCTCTCTACTCCACAGATAAT GGAAGCTAGGGCAATGCTATCACAGGAGCTACAGAGGAGAGCTAAGGCAAAACCCAGTTCAACTGCTTCGGAATCCATAGAAGCTTCTGATTCATCGCAT CAACAGTCACTTTCAGTGCCTTCTCATACTGAGACAGTTACCCAAGATACTGTGGCGGCCGAAGCTGAAAAAGAGAAGCACGCAATTCAAAGCACAGATG TCGAAATAGTTGACAAAGCTGTCGTCGTTCAGGAACAAACTACTCCTCCCTATGCAAGCTCATCTGCTAATGTCACGGTGCACCAGAAATTCGAGGACGA CGAAGACGAAGATGGTGACGACTGGTTGAAGGATGAAACTTCCGAAACCGTTGGTACCAGTGGCACCAATAAACACGTGGATCATGACGATGATGAGGAC GTGTCGTTCAGTGACCTCGAAGATGACGACGAGGAAGGCAATGTGCCAGTAAGTTACAAGAAGGTGACCTCGGAGAACAAGGAATCCAACGACTGGCTTG ATGTTGAAGACATTGATGTCCTGTGA
AA sequence Show only first row Show all	>Lus10011556 pacid=23140429 polypeptide=Lus10011556 locus=Lus10011556.g ID=Lus10011556.BGIv1.0 annot-version=v1.0 MSWLARSIANSLKLDDDDADGNDDHNDSKSPPTEEPDQHSPSSATSSTATPRGVKEDISELTKTLSRQFWGVASFLAPPPESSSPPGQISEESAKETENR QLLDPDETDDALIEGIRSDFAEIGGRFKSGISKLSSNKAVSEITKIASNFLQFASEGDVNDEDLIGTAVGVTEEAVAFARDVSMHPETWLDFPVPEVDDF EEDFDMSDAQQEHALTVERLAPRLAALRIELCPGYMSEGCFWKIYFVLLHPRLSKEDALLLSTPQIMEARAMLSQELQRRAKAKPSSTASESIEASDSSH QQSLSVPSHTETVTQDTVAAEAEKEKHAIQSTDVEIVDKAVVVQEQTTPPYASSSANVTVHQKFEDDEDEDGDDWLKDETSETVGTSGTNKHVDHDDDED VSFSDLEDDDEEGNVPVSYKKVTSENKESNDWLDVEDIDVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	0	1
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	1.0	0.8860
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	2.0	0.8751
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021943 [exp]	3.2	0.8502
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	3.9	0.8615
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	4.2	0.8837
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	5.1	0.8259
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	5.2	0.8567
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	7.5	0.8468
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	11.0	0.8458
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	12.1	0.8302

Compare expression of checked genes

Lus10011556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.