Plant FIBer expression Database

Lus10011557 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49760 50 / 3e-08 bZIP ATBZIP5 basic leucine-zipper 5 (.1)
AT2G22850 39 / 0.0003 bZIP ATBZIP6 basic leucine-zipper 6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019273
[exp]
166 / 2e-53 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2)
Lus10011722
[exp]
94 / 1e-24 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G007100
[exp]
97 / 3e-26 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
Potri.007G006900
[exp]
86 / 2e-21 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0018 bZIP PF07716 bZIP_2 Basic region leucine zipper
Representative CDS sequence
>Lus10011557 pacid=23140395 polypeptide=Lus10011557 locus=Lus10011557.g ID=Lus10011557.BGIv1.0 annot-version=v1.0
ATGGGGCCCGTGCCATCGATGATTGAGGAGCGAAAGAGGAGGAGGATGGTATCGAACAGGGAATCTGCGAGGAGGTCTAGGATGAGAAAACGAAAACACT
TAGAGAACCTAAGGAACAGGGTGAACCGGCTTCGGGTCGAGAACCAAGAACTGACCGACCGGGTCCGGTTTGTGTCGTACCATTTGAACCGGGTACGGAC
AAACACGGACCGGCTCCGGTCCGAACACATCATGCTCCGCCGGAAACTCTCAAACGTTGGCCACATATTGATGCTCCGCCAGCTTTCCTCCGCCTCCTCC
ACTGCATGGCCATGCAATAACATGATATTCCCCGCCGTCCCCTCCGCCGCTACGGCTGAACAAATCCCATCGCTAATCACTTCATAA
AA sequence
>Lus10011557 pacid=23140395 polypeptide=Lus10011557 locus=Lus10011557.g ID=Lus10011557.BGIv1.0 annot-version=v1.0
MGPVPSMIEERKRRRMVSNRESARRSRMRKRKHLENLRNRVNRLRVENQELTDRVRFVSYHLNRVRTNTDRLRSEHIMLRRKLSNVGHILMLRQLSSASS
TAWPCNNMIFPAVPSAATAEQIPSLITS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49760 bZIP ATBZIP5 basic leucine-zipper 5 (.1) Lus10011557
[exp]
0 1
AT2G19460 Protein of unknown function (D... Lus10006019
[exp]
1.4 0.8268
AT3G48180 unknown protein Lus10030823
[exp]
4.9 0.7802
AT4G39660 AGT2 alanine:glyoxylate aminotransf... Lus10029922
[exp]
6.2 0.8180
AT1G19090 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-L... Lus10020927
[exp]
8.7 0.7782
AT5G60660 PIP2F, PIP2;4 plasma membrane intrinsic prot... Lus10015083
[exp]
14.3 0.7970
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Lus10018711
[exp]
20.1 0.7760
AT2G37170 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROT... Lus10019934
[exp]
21.5 0.7711
AT5G38660 APE1 acclimation of photosynthesis ... Lus10003077
[exp]
29.4 0.7868
AT5G39570 unknown protein Lus10029322
[exp]
33.2 0.7408
AT3G57040 ATRR4, ARR9 RESPONSE REGULATOR 4, response... Lus10002750
[exp]
41.4 0.8088

Lus10011557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.