Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22840 260 / 1e-80 GRF ATGRF1 growth-regulating factor 1 (.1) AT4G37740 231 / 1e-69 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G13960 137 / 6e-36 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G36400 123 / 7e-31 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 122 / 2e-30 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G06200 115 / 5e-29 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G24150 103 / 2e-23 GRF ATGRF8 growth-regulating factor 8 (.1) AT5G53660 100 / 1e-22 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G45480 86 / 8e-18 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 44 / 0.0002 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019275 [exp] 810 / 0 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1) Lus10011558 [exp] 410 / 4e-139 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019274 [exp] 404 / 1e-136 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1) Lus10020352 [exp] 145 / 4e-39 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 140 / 4e-36 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 127 / 2e-33 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10033441 [exp] 129 / 1e-32 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 129 / 1e-32 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10037668 [exp] 118 / 2e-30 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G007200 [exp] 352 / 4e-115 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1) Potri.007G007100 [exp] 342 / 3e-111 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 288 / 2e-90 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.002G115100 [exp] 267 / 2e-82 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.001G169100 [exp] 142 / 7e-38 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 138 / 2e-36 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 137 / 6e-36 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 136 / 2e-35 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 134 / 3e-35 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 134 / 3e-35 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10011559 pacid=23140444 polypeptide=Lus10011559 locus=Lus10011559.g ID=Lus10011559.BGIv1.0 annot-version=v1.0 ATGGATTTTGGGGTTCTGGGTTCTCAACAATCACCCTCTATACTTCATCCTCCTGATTCAAACCAGAACGCCATTAGTACTCTGGGATCTGATGCTGCCT GCTGCAAACCTTCAAAGATCCCCAGAACTAGTAGTACAATGCCGCATGCTTCTGGTTTGCTGAGATCTAACTCTACTTCTAACATGCTCAGCTTCTCCAA CTCAGCTCCTTATCATCATTACCCTCCTTCTCCTGGCAGCTTGAGTGCCACCATGCATGGAGCAGCAGCTGCTTTCACTGGATTTCGTGGCCCATTCACA CCATCTCAATGGATGGAGCTTGAACACCAGGCCTTGATCTACAAATACATAACAGCAAATGTTGCAGTTCCTTCAAATTTGCTCAACCCGCTTAAGAAAT CTCTTTATCCTTTTGCCTTGTCTAGTTCCTCTTCTGCTGCATCCTTCATCCCTGGTTCTTTGGGATGGGGAGCTTTCCATCTGGGATATCCAGGCAGCAC CAACGATCCTGAACCAGGAAGGTGTCGCCGGACAGATGGGAAGAAATGGCGGTGCTCTAGAGATGCTGTTGCCGATCAAAAGTATTGTGAAAGGCACATT AACAGGGGCCGTCACCGTTCAAGAAAGCCTGTGGAAGGTCAGAGTGGCCATGGCGTGTCTGGAACCAAAGTGGTACAACAATTGGCTACCTCTACCTCAG CTATCACTACTAACTCTGCTGCTGCTGCCAGCTGCATTGGCATATCGTCCCAGCAGCAACAGCAGCAGCAGCTCAAGGACTTGCAGCTGCAGCATCAGCA TGCTAATGCCAGCAGGTTTTCCGTGAGCAAAGTGAATGCCAGTTCTTTGATGTCTGTCCCTAAACAGAATGTCCAGATAGAAGAGTCTCATTGCCATTCC GAGTTTGGACTCGTCTCCTATGATTCGTTGCTTAACCCATCGCAACAAGGAAGCACAACGAGCTGCTACAACACTTCTTTCTTGAGCTTCAGTGATCAAG ACACTCAAGACCAGCATTCTCTCCATCAGTTCATGGACAACGACTGGCAGCACAAAGATGGCCAGTCAACCCGCAATGTCATTAGCTGGCCCGAAGAGCT GAAATCCGACTGGACTCAGCTCTCGATGTCGATACCAATGGCTCCCTCCGACTTCTCATCCTCGTCCTCATCGCCAGCTCACGAGAAACTAGCTCTCTCC CCTTGGGGTGGCGGCGGCGGTGGTGGTGCTTCGATGGGGGGCGGTCCATTGGGAGAGGTGTTGACAACTTCAGCCAGTGCCAATGCAGGTTGTTGGGATG GGAGTAGTCCACCTCAGCTAGGGTTTTCGCCAACAGGTGTCTTGCAGAAGGCGACATTTGCTTCTCAGTCGAACAGCAGCACCGGTAGCAGCCCGAGAGG AGGTGATCACAGCAAGAGGAATAGCCTCTGTGACGATGTGCTTGGCTCAAACATCGTGAGTTCTTCGACGACAGCTTTGCCATCTCTGTAA
AA sequence Show only first row Show all	>Lus10011559 pacid=23140444 polypeptide=Lus10011559 locus=Lus10011559.g ID=Lus10011559.BGIv1.0 annot-version=v1.0 MDFGVLGSQQSPSILHPPDSNQNAISTLGSDAACCKPSKIPRTSSTMPHASGLLRSNSTSNMLSFSNSAPYHHYPPSPGSLSATMHGAAAAFTGFRGPFT PSQWMELEHQALIYKYITANVAVPSNLLNPLKKSLYPFALSSSSSAASFIPGSLGWGAFHLGYPGSTNDPEPGRCRRTDGKKWRCSRDAVADQKYCERHI NRGRHRSRKPVEGQSGHGVSGTKVVQQLATSTSAITTNSAAAASCIGISSQQQQQQQLKDLQLQHQHANASRFSVSKVNASSLMSVPKQNVQIEESHCHS EFGLVSYDSLLNPSQQGSTTSCYNTSFLSFSDQDTQDQHSLHQFMDNDWQHKDGQSTRNVISWPEELKSDWTQLSMSIPMAPSDFSSSSSSPAHEKLALS PWGGGGGGGASMGGGPLGEVLTTSASANAGCWDGSSPPQLGFSPTGVLQKATFASQSNSSTGSSPRGGDHSKRNSLCDDVLGSNIVSSSTTALPSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019275 [exp]	1.0	0.9685
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	3.9	0.9487
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	5.3	0.9518
AT5G19340			unknown protein		Lus10041215 [exp]	5.5	0.9474
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	6.6	0.9479
AT2G45260			Plant protein of unknown funct...		Lus10009923 [exp]	7.1	0.9252
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	8.1	0.9431
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	11.7	0.9148
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	13.0	0.9337
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	14.0	0.9240

Compare expression of checked genes

Lus10011559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.