Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58470 96 / 4e-22 XF41, ATRBP1 RNA-binding protein 1 (.1) AT4G14300 96 / 8e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 94 / 5e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 92 / 2e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 92 / 2e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 90 / 2e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 88 / 4e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 69 / 8e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 69 / 9e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 67 / 3e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019276 [exp] 472 / 3e-168 AT4G14300 149 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011728 [exp] 135 / 5e-37 AT5G55550 142 / 3e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10023740 [exp] 102 / 5e-24 AT4G14300 276 / 6e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011783 [exp] 98 / 2e-22 AT4G14300 290 / 1e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 96 / 8e-22 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018657 [exp] 93 / 8e-21 AT1G58470 233 / 1e-73 RNA-binding protein 1 (.1) Lus10032624 [exp] 93 / 8e-21 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10007721 [exp] 89 / 2e-19 AT1G58470 222 / 6e-68 RNA-binding protein 1 (.1) Lus10022889 [exp] 89 / 2e-19 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170400 [exp] 94 / 6e-21 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G115000 [exp] 92 / 7e-21 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.010G067500 [exp] 91 / 4e-20 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 88 / 3e-19 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 88 / 4e-19 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 88 / 6e-19 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 87 / 8e-19 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 87 / 1e-18 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 86 / 3e-18 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 86 / 4e-18 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10011560 pacid=23140361 polypeptide=Lus10011560 locus=Lus10011560.g ID=Lus10011560.BGIv1.0 annot-version=v1.0 ATGGAAAGAGGAGGAGGAGTACAAGAAACCAGTCAGCAGCTACCTCGGCCGAGGCTGTTCGTCGGAGGGCTGAAAAGGGAGGCCACGGGACTACTTCTCC AGGAGCACTTTAGGGAGTATTGGCACGTTGAAAGATTGTTTCATCTGTTACAACAAGCAAACTGGACTAAGCCGTACGTTCGGTTTCGTCGAATTCGAAG ACCCAGCTGCTGCTCAACGTGTTCTTCAAGATCGGCATTTCATTCTTGGCTAAAAGCTAAAGAGAAGAACCTCCACAATCCCAACGACAGCAAGAAGATC TTCGTCGGTGGCTTACCGCCAGCAGTTACACAGCAGGAGCTGAGGAGTTTCTTCGAGAGGTTCGGGACAGTGACTGATGTTGTCCTGATTCACGACAGGA TTACCAGAGCACTTCGAGGGTTCGGATTCGTGACCTTCGAATCCAAAGACTCGGCAGATGCAGCTCTGAAGTCTAGATATCACGAAATTAAAGGCAGGCG GGTGGAGGCGAAGAGAACAAATAATCCTGTAGTCAGGAACACTACTGTTAGTAATAATGTTGGAGACCATGATTTATCAATTGGCCGGACCGGTTTCTTC GGATATGGTTCTCCAGATTGTTATTACTGGTACAATCATTATTTCTGGAACATGTACTACCCATATTATGAAATTCCTGCAACAAATTACTATGCTGCTG GCAGCTGGTACTGTGGCTATGGCTATGCTGATGTTGGCACTGCTGGGGATGAAATCGGGACCGTTGGATGTCAGATTTCCGATGATCACGGTACTCAGCA CGATACAGAGGTTTCAGAAATCGATATCGATTCGTTCGACATGAAGAACTATCTTCTGGATCAAGAAGATGAAGCAGATGGGTCAGAATCTGACATTGAA AGAAGTCAGCCTAAGTTGATTAAAGGTTCGTCGAGTGGAGTGACAAAACCGATTTCGGTTAGTGATCATTCGATGCTACATCCCATCATTTGCAAGCTAT CATCAGTAGACAACAGTGTGTCACACTTGAGTTCTGATGACACAAGGTACGTAAGAGTGCTTTCCTAA
AA sequence Show only first row Show all	>Lus10011560 pacid=23140361 polypeptide=Lus10011560 locus=Lus10011560.g ID=Lus10011560.BGIv1.0 annot-version=v1.0 MERGGGVQETSQQLPRPRLFVGGLKREATGLLLQEHFREYWHVERLFHLLQQANWTKPYVRFRRIRRPSCCSTCSSRSAFHSWLKAKEKNLHNPNDSKKI FVGGLPPAVTQQELRSFFERFGTVTDVVLIHDRITRALRGFGFVTFESKDSADAALKSRYHEIKGRRVEAKRTNNPVVRNTTVSNNVGDHDLSIGRTGFF GYGSPDCYYWYNHYFWNMYYPYYEIPATNYYAAGSWYCGYGYADVGTAGDEIGTVGCQISDDHGTQHDTEVSEIDIDSFDMKNYLLDQEDEADGSESDIE RSQPKLIKGSSSGVTKPISVSDHSMLHPIICKLSSVDNSVSHLSSDDTRYVRVLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011560 [exp]	0	1

Compare expression of checked genes

Lus10011560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.