Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49750 361 / 7e-127 AtRLP44 receptor like protein 44 (.1) AT5G65830 335 / 3e-116 ATRLP57 receptor like protein 57 (.1) AT3G28450 128 / 2e-33 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 117 / 1e-29 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 108 / 1e-26 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 103 / 8e-25 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT5G62710 93 / 4e-21 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 92 / 6e-21 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 92 / 9e-21 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT3G43740 87 / 3e-20 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019277 [exp] 462 / 1e-166 AT3G49750 399 / 8e-142 receptor like protein 44 (.1) Lus10034278 [exp] 110 / 4e-28 AT5G48380 189 / 5e-55 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 112 / 1e-27 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 112 / 1e-27 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030812 [exp] 102 / 2e-25 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10037226 [exp] 100 / 7e-25 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 97 / 2e-22 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002579 [exp] 92 / 5e-22 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10036697 [exp] 91 / 2e-21 AT5G48380 215 / 8e-66 BAK1-interacting receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012300 [exp] 394 / 9e-140 AT3G49750 343 / 1e-119 receptor like protein 44 (.1) Potri.007G007500 [exp] 388 / 2e-137 AT3G49750 364 / 5e-128 receptor like protein 44 (.1) Potri.017G074400 [exp] 122 / 2e-31 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 120 / 6e-31 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 118 / 7e-30 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G177900 [exp] 118 / 7e-30 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 111 / 1e-27 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.004G081700 [exp] 110 / 3e-27 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G003800 [exp] 109 / 5e-27 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 109 / 7e-27 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10011561 pacid=23140368 polypeptide=Lus10011561 locus=Lus10011561.g ID=Lus10011561.BGIv1.0 annot-version=v1.0 ATGAAGCAGCTCATCTTCTTCCTCCTTCTGACCCTAATCTGCACACCCCTGCTAACAACCTCCCACCCAAACGACGAATCCTGTCTCACAAACCTGAAAC AATCCCTAAAAGACCCAGCAAACTCCCTCAACAACTGGACGAACCCCAACTTCGCAAACCCATGTTCAGGATTCACATCCTACCTCCCCGGAGCAACCTG CAACAACGGCAGAATCTACAAGCTCTCCCTTACAAACCTCGCCTTACAAGGCTCAATCTCACCATTCCTCTCCAACTGCACCAATCTCCAATCTCTCGAT CTGTCATCGAACTCAATTTCGGGTCCGATTCCGACCGATTTGCAGTACTTAGTCAACTTAGCGGTGTTGAACTTATCTGCTAACGAACTGTCAGGTGAGA TCCCGCCGCAAATTGCAATGTGTGCGTATTTGAACGTGATCGATCTGCATCAGAATCAGCTGACGGGACAGATCCCGCAGCAGCTGGGTTTGCTGGTGAG GCTGTCGAGCTTTGATGTGAGTGGGAATAAGCTGTCCGGGTTGATTCCTGGGTCGTTGGGGAATCGGAGTGGTAATTTGCCGAGGTTCAATGGGAGTTCT TTTCAGGGGAATAAGGATTTGTATGGGTACCCATTGCCGCCGATGAAGGCGAAAGGGTTGTCGGTGTTGGCGATCGTCGGGATTGGGTTGGGGAGTGGGT TGGCTAGCTTGGTGATTAGCTTTGCTGGGGTTTGTGTTTGGTTGAAGATTAGTGAGCATAAGATGGCTGTTGAAGAAGGGAACAAGATTAGCCAGCTTAT GCCTGAGTATTGA
AA sequence Show only first row Show all	>Lus10011561 pacid=23140368 polypeptide=Lus10011561 locus=Lus10011561.g ID=Lus10011561.BGIv1.0 annot-version=v1.0 MKQLIFFLLLTLICTPLLTTSHPNDESCLTNLKQSLKDPANSLNNWTNPNFANPCSGFTSYLPGATCNNGRIYKLSLTNLALQGSISPFLSNCTNLQSLD LSSNSISGPIPTDLQYLVNLAVLNLSANELSGEIPPQIAMCAYLNVIDLHQNQLTGQIPQQLGLLVRLSSFDVSGNKLSGLIPGSLGNRSGNLPRFNGSS FQGNKDLYGYPLPPMKAKGLSVLAIVGIGLGSGLASLVISFAGVCVWLKISEHKMAVEEGNKISQLMPEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	0	1
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	2.6	0.9706
					Lus10016903 [exp]	3.5	0.9574
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	3.6	0.9456
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10017595 [exp]	4.5	0.9540
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	4.7	0.9663
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	4.9	0.9657
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	5.7	0.9611
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	6.3	0.9584
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10041307 [exp]	7.1	0.9370
AT2G04480			unknown protein		Lus10032584 [exp]	8.0	0.9422

Compare expression of checked genes

Lus10011561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.