Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49740 303 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G41080 224 / 1e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 225 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 225 / 2e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 224 / 2e-67 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33170 227 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 225 / 4e-67 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 221 / 6e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 221 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 224 / 4e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019278 [exp] 573 / 0 AT3G49740 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019891 [exp] 235 / 2e-72 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000597 [exp] 226 / 6e-71 AT4G16835 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 231 / 8e-71 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028106 [exp] 230 / 2e-69 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 229 / 3e-69 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005064 [exp] 221 / 5e-69 AT2G21090 513 / 2e-179 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10007806 [exp] 230 / 1e-68 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019098 [exp] 228 / 2e-67 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091600 [exp] 238 / 5e-73 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 234 / 4e-71 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 232 / 4e-70 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G051300 [exp] 229 / 6e-70 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 230 / 3e-69 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 224 / 9e-69 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 224 / 3e-68 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 224 / 9e-68 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G012500 [exp] 223 / 3e-67 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006700 [exp] 221 / 3e-67 AT1G56570 732 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011562 pacid=23140364 polypeptide=Lus10011562 locus=Lus10011562.g ID=Lus10011562.BGIv1.0 annot-version=v1.0 ATGATTCATTCAAATGTCTTTAAAGCAGGGCTGGTTTCAAGAATCCAGGTATCAAATTCCTTGATTTCAGCATACTGCAAACATGGCACTGTCGAATCAG GTCATAAAGTGTTTCTCACCATGTCGTCGAGAAATTTGGTGTCGTGGAACACTATAATGTCAGGTTCGTCATTGAATGGATTTCACATACAGGGGTTAGA ACATTTCTATCAACTGCTAAAGTCTGGATTTCTCCCTAACGAGCATACCCTCACTATTGCTTTGAGCATTTGTGCAAGCATATCAGCTTCAGAACAAGCA AAGCAGATTCACGCTCATTTCATAAGAGTCAACTCTTCTCCAAGAGGGTCTTTAGGAAACGCCCTGATTACAACTTACTCGAAATGTGTCCTTCTTAATT CATCTTCAAAGGTCTTCAGCACCATGTCCCAGAAAGATGTCGTCTCCTGGAACGCCCTGATGTCTGCTTATGCACAACACGGTGAAGCAAACCATGCATT AAACTGTCGTGATGAAATGTCAGATTCGTTAGATATTCGTCCTGATCAGGCTACGTTCTCTGCAGCTCTCTCTGCCTGTAGCCATGCAGGCTTGGTCGAC GAGGGAGCTCGAGTTTTCAATTCCATGGTTGATAGGTACGGGATTAAACCCGGAGTGGATCATTTTTCGTGCGTTATTGACCTTCTGGGACGTGCTGGGT ATTTTACTCGGGTGGATGAGATAATCCAAAGGGAGGATTTTGAAGCTCATCCTAACATCTGGTGGACGTTGATCAGTGCTTGCGCTACTCTTGGGAACTT GGAACTGGGGAGGAGGGTTGCTGGGTATCTTCTCGAAACTGAACGACACAATTCGTCGGCTTATGTGCTGTTAGCTAATATATATGCAGGTGCTGGTCAG TGGGAAGAAGCAGCTAATGTGAGGCGAGAAATGGATACGTTTGGGACGATGAAGCAACCTGGACATAGCTGGATTTGCAGGTAA
AA sequence Show only first row Show all	>Lus10011562 pacid=23140364 polypeptide=Lus10011562 locus=Lus10011562.g ID=Lus10011562.BGIv1.0 annot-version=v1.0 MIHSNVFKAGLVSRIQVSNSLISAYCKHGTVESGHKVFLTMSSRNLVSWNTIMSGSSLNGFHIQGLEHFYQLLKSGFLPNEHTLTIALSICASISASEQA KQIHAHFIRVNSSPRGSLGNALITTYSKCVLLNSSSKVFSTMSQKDVVSWNALMSAYAQHGEANHALNCRDEMSDSLDIRPDQATFSAALSACSHAGLVD EGARVFNSMVDRYGIKPGVDHFSCVIDLLGRAGYFTRVDEIIQREDFEAHPNIWWTLISACATLGNLELGRRVAGYLLETERHNSSAYVLLANIYAGAGQ WEEAANVRREMDTFGTMKQPGHSWICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011562 [exp]	0	1
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	3.0	0.6616
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	4.0	0.6826
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	23.6	0.6322
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	25.1	0.6407
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	38.0	0.6454
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	54.7	0.5989
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	56.2	0.6274
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10035766 [exp]	58.3	0.5999
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	59.2	0.6136
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10003446 [exp]	60.7	0.5509

Compare expression of checked genes

Lus10011562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.