Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49740 340 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 171 / 2e-47 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 161 / 8e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 159 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 148 / 5e-39 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G20770 145 / 6e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71490 144 / 8e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G61170 144 / 9e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 144 / 1e-37 MEF22 mitochondrial editing factor 22 (.1) AT1G68930 144 / 1e-37 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019278 [exp] 723 / 0 AT3G49740 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038839 [exp] 164 / 4e-45 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 160 / 2e-43 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 160 / 2e-43 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022629 [exp] 156 / 6e-42 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 152 / 3e-40 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024222 [exp] 150 / 4e-40 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 151 / 5e-40 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003324 [exp] 149 / 8e-40 AT2G41080 597 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 174 / 3e-48 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 162 / 5e-44 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G021700 [exp] 158 / 1e-42 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 156 / 1e-41 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G096400 [exp] 154 / 5e-41 AT5G03800 993 / 0.0 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 151 / 5e-40 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 150 / 9e-40 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G074700 [exp] 147 / 7e-39 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 147 / 1e-38 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G075300 [exp] 147 / 1e-38 AT3G26540 815 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011563 pacid=23140390 polypeptide=Lus10011563 locus=Lus10011563.g ID=Lus10011563.BGIv1.0 annot-version=v1.0 ATGAGTAAGTTCCTAACCAAAGTAACCGAACCCGCCAAAACCAAACTCCTCCAACTCAACAAACAACTCGCCAGTCTCGTTCGTTCCCGCCACTTCCAAC ATGCACTCCACCTGTTCGACGAAATTCACTCTTCTTCTTCTTCTCCCCATACCCACCTCAAACCAGACGAGTACACCCTCTCCGCAGCCCTCACCGCCTG CGCCAATCTCCAGAACGCCGCATTTGGCTCCGAGCTCCACGCCCACGCCGTTAAATCCGGCTTGAAATCCCACCTCCACGTTTCCAACACGCTTCTCCTT GTATACGCCAGAGCTCGAGATGCTGCTTCCATGAAATTTGTTTTCCGGGAGATTGAGTACCCGGATGTGTTTTCGTACGCTACGGTGTTGTCGGCTTGTG CGAAGAGTGGGGATTTGGAGTATACATTCCAGGTGTTCGATGAAATGCCTGTTATAGATGTGTCTGCGTGGAATGCGGTGATTACCGGGTGTGTGGAGAG TGGGAATGAAGGAGTTGGGTTTCTGGTGTTTAGGGATATGCATAGGTTAGGTGTTTCGCCTGATAATTACAGCTTTGGAAGTGTTCTTAGTGGGTGTTGT TTGGAAAGGGTAGAGTTTGGGAGGCAGGTGCATTCTCTGGTTATTAGAACTGGTTCCTTGGCGGGAACTTCCATTTTTAATGCTTTGCTTACTATGTATT TCAGTTATGAAGAAGTTGGTAATGCAGTTTTAGTATTTGAGGAAGTAGAAGATGAGGTGCACAATCATATTTCGTACAATGTGATGATCAACGGTTTGCA AAGTGCCGGGATGGTTGATAAAGCCATCCTTATGTTCAAAAAGATGCTAGCTTGCGATCTTTCTCCTTCGGAATTGACTTTTGTGAGTCTCATCAGCTCG TGTCACCATACTACAGCCGGCTGTCAAGTTCATTCGCATGTTATCAGGAGGGGCTTTGAAGCTTACACTGTGGTAAGCAATTCAATGATAACCATGTACG CAAACTTTGAAGACATGGTTTCAGCTTACATGATCTTCGACAGTCAGAGAGCGAAGGATGATGTCTCATGGAATGCTATCATATCCGGCTATTCTCAGTG GAACTGTGGTAGATCAGCGATCTCCTCGTACATCAAAATGCAGAAGGCAGAGCTATGA
AA sequence Show only first row Show all	>Lus10011563 pacid=23140390 polypeptide=Lus10011563 locus=Lus10011563.g ID=Lus10011563.BGIv1.0 annot-version=v1.0 MSKFLTKVTEPAKTKLLQLNKQLASLVRSRHFQHALHLFDEIHSSSSSPHTHLKPDEYTLSAALTACANLQNAAFGSELHAHAVKSGLKSHLHVSNTLLL VYARARDAASMKFVFREIEYPDVFSYATVLSACAKSGDLEYTFQVFDEMPVIDVSAWNAVITGCVESGNEGVGFLVFRDMHRLGVSPDNYSFGSVLSGCC LERVEFGRQVHSLVIRTGSLAGTSIFNALLTMYFSYEEVGNAVLVFEEVEDEVHNHISYNVMINGLQSAGMVDKAILMFKKMLACDLSPSELTFVSLISS CHHTTAGCQVHSHVIRRGFEAYTVVSNSMITMYANFEDMVSAYMIFDSQRAKDDVSWNAIISGYSQWNCGRSAISSYIKMQKAEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011563 [exp]	0	1
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	5.1	0.8368
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	10.5	0.8414
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	11.1	0.8366
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	15.9	0.8199
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	21.4	0.7981
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	21.9	0.8195
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	24.6	0.8229
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	27.7	0.8027
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	28.3	0.8324
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	28.7	0.8153

Compare expression of checked genes

Lus10011563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.