Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 414 / 7e-148 unknown protein AT5G65810 400 / 2e-142 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019279 [exp] 503 / 0 AT3G49720 421 / 7e-151 unknown protein Lus10039648 [exp] 423 / 1e-151 AT3G49720 405 / 2e-144 unknown protein Lus10007228 [exp] 416 / 9e-149 AT3G49720 401 / 6e-143 unknown protein Lus10032796 [exp] 335 / 6e-117 AT3G49720 337 / 7e-118 unknown protein Lus10012481 [exp] 329 / 2e-114 AT3G49720 332 / 1e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082400 [exp] 391 / 8e-139 AT3G49720 393 / 7e-140 unknown protein Potri.001G288200 [exp] 382 / 1e-135 AT3G49720 342 / 1e-119 unknown protein Potri.002G114000 [exp] 350 / 1e-122 AT5G65810 364 / 2e-128 cotton Golgi-related 3, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07021 [flax] [poplar] MetW Methionine biosynthesis protein MetW
Representative CDS sequence Show only first row Show all	>Lus10011564 pacid=23140391 polypeptide=Lus10011564 locus=Lus10011564.g ID=Lus10011564.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGGCAAGTCGGATCCGCCAGGAGATTCGGCGACACTGGAAACTTCCCTTTCTCTTCAGCTCTCCATTCCAAGTCCCGCTCTTCTCCTCTCC TCTCCATCGCCCTCGTCGCCTTCGGAGCTGTCCTTCTCATTGTCTATGCTTACGGCGGCCAAGGTTTGTTCGGCGGTAACAAAGGTGGCTCTATCAAGGT TGAAGGTGACTACACGTGCACGGCAGAAGTACAGAGAGCGATACCTTTCTTGAAGAAAGCATACGGAGACAGCATGCGTAAAGTTTTGCACGTTGGTCCA GACACTTGTGCTGTTGTATCGACTTTGTTGAAAGAAGAAGAAACCGAGGCTTGGGGTTTGGAGCCATATGACATAGAGGATGCAGATGCAAGCTGCACTA GTCTTGTCCGAAAGGGTCTCGTCCGAGTGGCAGATATCAAATTTCCTCTTGCCTACAGGGCAAAGTCGTTCTCCCTTGTTGTCGTGTCGGATGCTCTGGA TTACCTCTCGCACAAGTACCTGAACAGGACTCTTCCTGAACTTGCCAGGGTTGCTTCAGATGGTATCGTTATATTTGCAGGTTATCCTGGCCAACAGAGA GCTAAAGTTGCAGAATTGTCCAAATTTGGACGGCCGCCGAAGATGAGGAGCTCGTCTTGGTGGATTCGCTACTTCGTTCAAACGAGTCTAGACGAAAACG AAGCTGCACAGAAGAAGTTTGAACAGGCAGCACTGAAGGGATCATACCAGCCAAACTGTCAAGTATTCCACCTGAAGCCGTACCATTAA
AA sequence Show only first row Show all	>Lus10011564 pacid=23140391 polypeptide=Lus10011564 locus=Lus10011564.g ID=Lus10011564.BGIv1.0 annot-version=v1.0 MSRRQVGSARRFGDTGNFPFSSALHSKSRSSPLLSIALVAFGAVLLIVYAYGGQGLFGGNKGGSIKVEGDYTCTAEVQRAIPFLKKAYGDSMRKVLHVGP DTCAVVSTLLKEEETEAWGLEPYDIEDADASCTSLVRKGLVRVADIKFPLAYRAKSFSLVVVSDALDYLSHKYLNRTLPELARVASDGIVIFAGYPGQQR AKVAELSKFGRPPKMRSSSWWIRYFVQTSLDENEAAQKKFEQAALKGSYQPNCQVFHLKPYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49720			unknown protein		Lus10011564 [exp]	0	1
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	3.7	0.8209
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10033382 [exp]	5.7	0.7656
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	6.9	0.8552
AT3G57200			unknown protein		Lus10042032 [exp]	8.1	0.7746
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	8.6	0.8339
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	12.2	0.8334
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	12.2	0.7862
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10016140 [exp]	12.6	0.8074
AT4G26455		WIP1	WPP domain interacting protein...		Lus10027087 [exp]	15.4	0.7215
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	15.4	0.7830

Compare expression of checked genes

Lus10011564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.