Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37770 717 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT3G49700 712 / 0 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT5G65800 708 / 0 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT2G22810 668 / 0 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G08040 620 / 0 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT4G26200 520 / 0 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT3G61510 508 / 4e-178 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT1G01480 498 / 1e-173 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G11280 492 / 1e-171 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT5G51690 381 / 4e-128 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007223 [exp] 796 / 0 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 792 / 0 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007714 [exp] 565 / 0 AT3G49700 585 / 0.0 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) Lus10032695 [exp] 549 / 0 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 544 / 0 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10010243 [exp] 530 / 0 AT4G37770 570 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007910 [exp] 509 / 4e-178 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10017521 [exp] 502 / 4e-175 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10036396 [exp] 498 / 2e-173 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012600 [exp] 768 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 759 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G113900 [exp] 653 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.006G149600 [exp] 537 / 0 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.018G067000 [exp] 531 / 0 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.001G099400 [exp] 527 / 0 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 518 / 0 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 515 / 0 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.015G132100 [exp] 392 / 8e-132 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 382 / 1e-127 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10011565 pacid=23140416 polypeptide=Lus10011565 locus=Lus10011565.g ID=Lus10011565.BGIv1.0 annot-version=v1.0 ATGCCTGCACCCAAAACCACAAAGAAATCTTCTTCTCCAGTGATGCTGTCGAGGAAAGCTACGTCCAACACTCACGGCCAAGACTCTTCATACTTCCTAG GGTGGGAAGAGTACGAGAAGAACCCTTACGACGAAACCACCAACCCGACCGGTATAATCCAGATGGGTTTGGCCGAGAACCAGCTCTCGTTCGACCTCCT CGAGTCCTGGCTCGCCAACAACCCCGAACCGGCCTCGTTCAGGCAGAGCGATGGCCGGTCTGTGTTCCGCGAGCTGGCACTCTTCCAGGACTACCACGGC CTCCCCGCCTTCAAGAAAGCATTGGTCGAGTTCATGTCGGAGATTAGAGGCAACAAAGTGACATTCGATCAGAACAAGATTGTCTTGACCGCCGGTGCAA CGTCGGCCAATGAGACACTCATGTTTTGCCTCGCCGAACCCGGCGAGGCATTCCTCTTACCTACCCCTTATTATCCAGGATTCGATCGGGATTTGAAATG GAGAACTGAAGTGGAAATAGTGCCGATACATTGCACGAGCTCGAACGGGTTCCAAATCACGAAACCGGCTCTAGAACAAGCTTATCTGGATGCCCAAACA AGGAACCTGAAAGTCAAAGGAATACTTGTGACCAACCCGTCGAATCCACTGGGGACCACGTTGACCAGGAGCGAACTCAATCTCCTGGTCAACTTCATAT CCGACAAACAGATCCACCTCGTGAGCGACGAGATCTATTGTGGCACGGTGTTCTCCTCTCCGAGCTACACTAGCATTATGGAGGTTCTCAAGGACAAGAA ACTCGAGAACAGTGAGCTCTCGAACCGGGTCCATGTTGTGTATAGCATGTCCAAGGACTTTGGCCTCCCGGGGTTTAGGGTGGGGGCAATATACTCTAAC GACGAGCTCGTAGTCTCGACTGCGACGAAAATGTCGAGCTTTGGGCTCGTTTCGTCCCAGACACAGTACCTCCTCTCGGCTGTCCTGTCTGACAAGAAGT TCACGAAGAATTATGTCGCGGAGACCCAGAGGAGGTTGAAGCAGAGACAGAAGTCTCTGCGGAAAGGACTTCAGAACGCAGGGATTAGCTGCCTAAAGAG CAACGCCGGGTTATTCTGTTGGGTTGACATGAGGCACTTGTTGGATGAGAACACGTTTGAAGCCGAGATCGAGCTATGGAAGAGGATCATCTACGACGTC AAGCTTAATATCTCGCCAGGATCCTCGTGCCATTGTGTCGAGCCCGGATGGTTTAGGGTTTGTTTCGCAAATATGTCGGAGGAAACTCTAGAGTTGGCCG TAAAACGACTTAAAACATTCGTCGAGGACAACTACAAAACCGGAGTAGGAGCTCCTCTTCGCAGCCAGAGCGGCCACGAGATGTTAAAGAATTTGAGGAA GAAGAATCTCACCAAGTGGGTTTTCCGACTATCATACTCCTCCGACCGTGAGCCGGAGGGACGATAG
AA sequence Show only first row Show all	>Lus10011565 pacid=23140416 polypeptide=Lus10011565 locus=Lus10011565.g ID=Lus10011565.BGIv1.0 annot-version=v1.0 MPAPKTTKKSSSPVMLSRKATSNTHGQDSSYFLGWEEYEKNPYDETTNPTGIIQMGLAENQLSFDLLESWLANNPEPASFRQSDGRSVFRELALFQDYHG LPAFKKALVEFMSEIRGNKVTFDQNKIVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLKWRTEVEIVPIHCTSSNGFQITKPALEQAYLDAQT RNLKVKGILVTNPSNPLGTTLTRSELNLLVNFISDKQIHLVSDEIYCGTVFSSPSYTSIMEVLKDKKLENSELSNRVHVVYSMSKDFGLPGFRVGAIYSN DELVVSTATKMSSFGLVSSQTQYLLSAVLSDKKFTKNYVAETQRRLKQRQKSLRKGLQNAGISCLKSNAGLFCWVDMRHLLDENTFEAEIELWKRIIYDV KLNISPGSSCHCVEPGWFRVCFANMSEETLELAVKRLKTFVEDNYKTGVGAPLRSQSGHEMLKNLRKKNLTKWVFRLSYSSDREPEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	0	1
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	1.4	0.9266
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	1.7	0.9321
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	3.0	0.9208
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	3.2	0.9085
					Lus10027448 [exp]	3.5	0.9174
					Lus10005748 [exp]	3.6	0.8604
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	4.5	0.8746
					Lus10005747 [exp]	5.3	0.8998
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	5.5	0.9018
AT1G07860			unknown protein		Lus10036143 [exp]	5.7	0.8112

Compare expression of checked genes

Lus10011565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.