Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49730 823 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 821 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 244 / 3e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 244 / 4e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14820 236 / 4e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 235 / 8e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 233 / 4e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 229 / 3e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 211 / 3e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22670 205 / 5e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001633 [exp] 252 / 1e-75 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 248 / 3e-73 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015741 [exp] 234 / 6e-68 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 229 / 1e-67 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 228 / 9e-66 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 221 / 3e-64 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041193 [exp] 194 / 3e-54 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 195 / 4e-54 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 186 / 2e-51 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176100 [exp] 891 / 0 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 250 / 4e-75 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 239 / 8e-72 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 243 / 3e-71 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 223 / 6e-65 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G053600 [exp] 207 / 2e-58 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 201 / 9e-57 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 197 / 5e-56 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 196 / 9e-55 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 194 / 6e-54 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011566 pacid=23140405 polypeptide=Lus10011566 locus=Lus10011566.g ID=Lus10011566.BGIv1.0 annot-version=v1.0 ATGGTTAGGCAAACAATGCAGAGGGTTTGTCAAGGTATGTCTAGTAATCTTGTAAAGTCACAGCCTTTTCCTCATTCCTTGAATCCGAAATTTGCTCCTT TGGTTCTCTTCCGGTTTCATAATCGAGCCAAGGAGGGCTCCGAATCAGATGATGAAGCTGAACGGTTCGGTTTGGTCCTTAATAGAGTCAGCCACGTTGA CGAATTTGCAAGGGATGTGGAAAAAGTGTACAGAATTCTCAGGAAGTTCCACTCAAGGGTTCCCAAATTGGAGCTTGCCTTGCAGGACTCCAGTGTTACG ATTCACGATAGGTTAACGGAGCGTGTGTTGAATCGATGCGGAGATGCAGGGAATCTAGGTTACAGATTCTTCGTGTGGGCGTCGAAACAGCCTGGATATC GCCACAGTTATGAGAACTACAAAGCCATGGTGAAAATCCTGAGCAAAATGAGACAGTTCGGTACTGTTTGGGCTTTGCTCGAGGAAATGAGGAACGATAA CAGCGTGTTGATCACGAGCGAGGTCTTTATTGTTCTGATGAGAAGATTCGCTGCTTCCAGAATGGTTAAGAAGGCGATCGAGGTGTTGGATGAAATGCCC AAATACGGATGCGAAGTCGATGACTATGCGTTCGGATGTTTGCTAGATGCGTTGTGTAAGAACGGTCATGTAAAGGAAGCTGCTTTACTTTTCGAAGATA TGAAGATGAGATTCCCCCCTAGCTTGAGGCATTTTACTTCTTTGTTGTATGGTTGGTGCAGAGAAGGCAAGTTAATGGAGGCTAAACATGTTCTGGTCCA GATTAAAGAATCTGGATATGATCCGGATATCGTAGTGTATAATAATCTCTTGAGTGGTTACGCGATCGCAGGGAAAATGGCAGATGGTTATGATCTTTTG AAGGAGATGAGGAAGAGGAAAGGGTGTGAACCAAATGCAAATTCGTATACGATTTTGATCCAGGGGTTTTGCAAGCATCAGAAGATGGACGATGCAATGA GGGTTTTCGTCGAGATGGAAAGATATGACTGTGCTGCTGATATTGTAACGTATACTACATTGATCAGTGGCTTCTGCAAATGGGGTAAAGTAGAGAAAGG ATATCAGATTTTATACAGTATGATACAGAAAGGCCATAGACCTAATCAATTGACTTATCTCCATATAATGCTGGCACATGAAAAGAACGAGCAGCTCGAG GAGTGTATCGATTTGATGTCACAGATGCGGAATCAAGGCTGTTGCGATCCCGATCTCGGTATTTACAATGTAGCAATCCGACTTGCTTGTAAATTAGGCG AGGTGAGTGAAGCGGTTCGACTTTGGAACGAAATGGAAGCTAGTGTCTTTAGTCCAGGGTTTGATACATTTGTGATTATGGTGAATGGATTCATAAGTCA GGGGAATTTGGTGGAGGCTTGTGAGTATTTCAAAGAGATGGTTTCGAGGGGGTTGCTGTCTGCTCCTCAATACGGTATCTTGAAGGACTTGTTGAACCCT TTGTTGAGAGAGGGAAAGCTCGAAATGGCAAAAGATGTTTGGAGCTGCATTGTGAGCAAAGGGTGTGATTTGAATTTGGATGCATGGACGATTTGGATTC ATGCGCTATTCTCTAGCGGGAATGTGAAAGAGGCATGTTCATATTGTTTGGAGATGATGGATGCGGATGTAATGCCACGTCCGGATACGTTTGCTAGGCT GATGAAGGGGTTAAGGAAGTTGTACAATAGACAGTTTGCTGCGGAGATTACAGAGAAGGTGAGGCAGATGGCTGCGGAGAGGGAGATGACGTTTAAGATG TATAAGAGACGGGGAGAAAGGGATTTGAAGGAGAAGAATAAGGCGAAAACTGAAGATCCGAGGAAGAGGAGAGCTCGTATGCGCAGGTGGGGTGGCGGAG GGAGCGAAAAGGTTAAGGCTTTATAA
AA sequence Show only first row Show all	>Lus10011566 pacid=23140405 polypeptide=Lus10011566 locus=Lus10011566.g ID=Lus10011566.BGIv1.0 annot-version=v1.0 MVRQTMQRVCQGMSSNLVKSQPFPHSLNPKFAPLVLFRFHNRAKEGSESDDEAERFGLVLNRVSHVDEFARDVEKVYRILRKFHSRVPKLELALQDSSVT IHDRLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKILSKMRQFGTVWALLEEMRNDNSVLITSEVFIVLMRRFAASRMVKKAIEVLDEMP KYGCEVDDYAFGCLLDALCKNGHVKEAALLFEDMKMRFPPSLRHFTSLLYGWCREGKLMEAKHVLVQIKESGYDPDIVVYNNLLSGYAIAGKMADGYDLL KEMRKRKGCEPNANSYTILIQGFCKHQKMDDAMRVFVEMERYDCAADIVTYTTLISGFCKWGKVEKGYQILYSMIQKGHRPNQLTYLHIMLAHEKNEQLE ECIDLMSQMRNQGCCDPDLGIYNVAIRLACKLGEVSEAVRLWNEMEASVFSPGFDTFVIMVNGFISQGNLVEACEYFKEMVSRGLLSAPQYGILKDLLNP LLREGKLEMAKDVWSCIVSKGCDLNLDAWTIWIHALFSSGNVKEACSYCLEMMDADVMPRPDTFARLMKGLRKLYNRQFAAEITEKVRQMAAEREMTFKM YKRRGERDLKEKNKAKTEDPRKRRARMRRWGGGGSEKVKAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	0	1
AT5G06270			unknown protein		Lus10029413 [exp]	3.2	0.8921
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10008164 [exp]	6.3	0.8607
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	9.9	0.8920
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	10.5	0.8564
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015067 [exp]	12.2	0.8623
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	13.3	0.8564
AT1G30680			toprim domain-containing prote...		Lus10038433 [exp]	14.0	0.8524
					Lus10035486 [exp]	16.0	0.8523
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10029044 [exp]	16.1	0.8437
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	16.5	0.8705

Compare expression of checked genes

Lus10011566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.