Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49680 573 / 0 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT5G65780 555 / 0 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G10070 446 / 6e-156 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT1G50110 397 / 4e-137 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50090 396 / 1e-136 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10060 395 / 3e-136 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT3G19710 343 / 5e-116 BCAT4 branched-chain aminotransferase4 (.1) AT5G27410 71 / 5e-13 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 67 / 8e-12 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019258 [exp] 778 / 0 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011604 [exp] 620 / 0 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 417 / 1e-145 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007247 [exp] 414 / 7e-143 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028246 [exp] 417 / 3e-142 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 385 / 5e-133 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 275 / 3e-90 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10035342 [exp] 65 / 7e-11 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 54 / 2e-07 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008000 [exp] 621 / 0 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.002G113600 [exp] 443 / 6e-155 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 405 / 4e-140 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 404 / 2e-139 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.005G039100 [exp] 67 / 6e-12 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10011567 pacid=23140425 polypeptide=Lus10011567 locus=Lus10011567.g ID=Lus10011567.BGIv1.0 annot-version=v1.0 ATGGAGAAAACCGCCGTACTAGGAGGTTTGAATCCGAATCACCTACTCTCCCCATCGCGGAACGTCTCCTTGCTCCTCCGCTCATCCACGCCGTCCTTCG CCGCCGATCGCAGACTCCACGCCGCCAGTCCTTCGTTGTCCTTCAAGAAGCAGCTTCCATCTCTTACTGCTGTGCATTCTGTGTCTCCTTTCAAGCGAGA TGCCGTCGCCTCCGATACTTACAGCACCGGAACAACCGATTTGTCTAGTATAGACTGGGACAATCTAGGGTTTGGATACATTGCTACTGATTATATGTAT ATGATGAAATGTGATAAAAAAGGGAGCTTCTCCAATGGCGAGCTCCAGCGCTTTGGCAACATTGAATTGAGCCCTTCTGCTGGAGTGCTGAATTATGGCC AGGGACTATTTGAGGGTCTGAAGGCTTACAACAAAGAAGATGGCAATGTACTCTTGTTTCGTCCCGAAGAAAATGCTCGTCGAATGCAGATTGGTGCTGA GAGGATGTGTATGCCAGCTCCTACTGTTGAACAATTTGTGGAAGCTGTAAAGGGAACAGTCTTGGCGAATAAGCGTTGGATACCACCTCCTGGTAAAGGG TCTTTGTATATAAGGCCATTGCTCATGGGAAGTGGAGCTGTCCTTGGTCTTGCACCGGCTCCCGAGTACACCTTTCTAATCTATGTATCGCCTGTGGGAA ACTACTTTAAGGAAGGTCTTTCACCAATTAATTTGATTATTGAGCATGAGCTACACCGGGCAACTCCTGGTGGCACTGGAGGAGTGAAAACTATTGGCAA CTATGCTGCTGTGCTCAAGGCTCAAGCTGCTGCAAAGGACAAAGGTTACTCTGATGTGCTGTATCTTGACTGTGTTCATAAGAAGTACCTGGAGGAGGTA TCATCATGCAATATTTTCGTTGTCAAGGGAAACACAATCTCTACACCTGCAATTAAGGGAACAATCCTTCCTGGCATCACTAGGAAAAGCATAATCGATG TTGCTCGAAGCCAAGGGTTTCAGGTTGAAGAACGACTCGTCGCAGTGGATGAGTTACTCACTGCCGATGAAGTATTCTGCACCGGAACAGCTGTGGTTGT ATCGCCAGTTGGAAGCATCACTTACAAGGGCCAAACGACGAAGTATGGCGGCGGAAGTGTTGGCGCAGTCTCGCAAAAGCTCTACAGTGTGCTGACAAGC CTCCAGATGGGTCTCATAGAAGATAAGATGAACTGGACCGTGGCGCTGCATTAG
AA sequence Show only first row Show all	>Lus10011567 pacid=23140425 polypeptide=Lus10011567 locus=Lus10011567.g ID=Lus10011567.BGIv1.0 annot-version=v1.0 MEKTAVLGGLNPNHLLSPSRNVSLLLRSSTPSFAADRRLHAASPSLSFKKQLPSLTAVHSVSPFKRDAVASDTYSTGTTDLSSIDWDNLGFGYIATDYMY MMKCDKKGSFSNGELQRFGNIELSPSAGVLNYGQGLFEGLKAYNKEDGNVLLFRPEENARRMQIGAERMCMPAPTVEQFVEAVKGTVLANKRWIPPPGKG SLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGLSPINLIIEHELHRATPGGTGGVKTIGNYAAVLKAQAAAKDKGYSDVLYLDCVHKKYLEEV SSCNIFVVKGNTISTPAIKGTILPGITRKSIIDVARSQGFQVEERLVAVDELLTADEVFCTGTAVVVSPVGSITYKGQTTKYGGGSVGAVSQKLYSVLTS LQMGLIEDKMNWTVALH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011567 [exp]	0	1
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10037175 [exp]	6.3	0.8294
AT3G22520			unknown protein		Lus10000233 [exp]	16.9	0.7806
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10035904 [exp]	20.6	0.7975
AT5G03670			unknown protein		Lus10027723 [exp]	30.4	0.7425
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	37.8	0.7177
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	41.0	0.7422
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	49.4	0.7541
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	50.2	0.6461
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10024441 [exp]	61.0	0.6946
AT1G27435			unknown protein		Lus10041533 [exp]	61.7	0.6884

Compare expression of checked genes

Lus10011567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.