Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65770 727 / 0 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 710 / 0 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G67230 218 / 4e-58 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 181 / 3e-46 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 142 / 3e-34 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019257 [exp] 1427 / 0 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10034383 [exp] 224 / 6e-60 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034263 [exp] 221 / 5e-59 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10003075 [exp] 199 / 7e-52 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034075 [exp] 162 / 2e-40 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 135 / 4e-32 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 125 / 6e-29 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034300 [exp] 866 / 0 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Potri.017G111400 [exp] 223 / 6e-60 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.008G114800 [exp] 212 / 4e-56 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011568 pacid=23140386 polypeptide=Lus10011568 locus=Lus10011568.g ID=Lus10011568.BGIv1.0 annot-version=v1.0 ATGGCGAGCCCGATTATGCCGAGCAGCAGTGGTAGTAGTAGGGCGTTGTCGCTGACTCCGGGCGCGAGGGTTAAGCCGGTGAGCGACGATAGCACGATCT GGATGCGGCTTAAGGAGGCTGGGTTCGATGAGAATTCGATTCAGAGGAGGGACAAGGCTGCTCTGATTTCGTACATCGCTAAGCTCGAAACTGAGAACTT TGATCTGCAACACCACATGGGTCTTCTACTATTGGAGAGAAAGGAATCGTCTGAAAAGTATACACAACTGGAAGCTACAGCAGAAGCTTCTGACCTGTTG CGAAGACGTGAACAAGCAGCTCATGCAACTGCCTTGGCAGAGGCAAAGAAAAGAGAAGAAAGTTTGAAGAAGGCTCTAGGAGTTGAGAAAGAGTGTATAT CTAGTATAGAGAAAACCCTGCATGAGATGCGTGCAGAATGTGCAGAGACCAAAGTTGCAGCTGAATCTAAATTGGTTGAAGCACACAATATGGTAGAAGA AACCCAGAAAAAGATCGTCGATGCAGAAGAGAAATTGCGCACAGCGGAATCTTTGCAAGTTGAAGCCAACTGTAGTAAGCGAGCTGCTGATAGAAAACTC CAGGAAGTTGAAGCACGTGAAAGAGATCTTACTAGGCGTATGAGTGAATTTAAATCTGATTGCAATGCTAGAGAGAAGGAAGTTGACCTCGAGAGGCAGC ACCTGAGTGAAAGGAGGAAGTTTCTCCAACAGGAGCATGAGAGATTGCTGGATGGCCAAATGCTTTTGAACCAGAGGGAAGATTACATTGCCAGTAAATC TCAAGAGCTTAGCCGGGTGGAAAATGAGTTGGAAGTATCAAGGGCTAAACTTGAAGAAGAACGTAGACGCCTTAAAGAGGAGAAGTCTAAATTGGAGTTG GCAATGGCGTCTCTGTCTCAACGAGAACAGGCTCTTGCTGAGAGGGAAAATAACTTGAACAAGAGAGAGCGGGATCTACTTGTTATGCAGGAAAAGCTTG CCTGCAAAGAATCTGCTGCAATAAGAAAGGTCAGTGCCAATCATGAGGCGATTCTGAGAACCAGAAAGTCAGAATTGGAAGCTGAGTTACAAGTGAGGCG TAAGGAATTTGAAGATGAGCTTGAGTCGAAAAGAAGGGCTTGCGAGTTGAGGGAGGTTGATCTTAGCCAACGTGAAGATGAGTTGCGAGAGAAGGAACAT GAGTTGGATGCTCAAACTAGAGGTCTAGCAGAGAAAGAGAAGGATGTGGCGGAAAAGATTAGCATTGTTGATGAAAAAGAAATGCGGTTAGTCAATGCTG AAAAGGATATTGAGATTAAGACAACCCTTTTACATAAAGAAGCAGAAGAAATTAAACGCATCAAACTAGAGCTTCAGGAGTCATTGGTTTCCTTGGAAGA CAAAAGGTTGCAGGTTGATAGTGCCAAGGATAAGTTGGAGACCATGAAAACTGAAACACATGAGCTGTCGGATCTGGAAGTCAGACTAAAAGAAGAAGTT GACCTTGTGAGGGCCCAAAAAGTTGAGCTCTTGACTGAAGAGGAGCGACTAAAAGTGGAGAAGTCTAAATTCGAAGCTGAGTGGGAGTTAATTGATGAGA AAAGAGAGGAGTTGCGTAAAGAAGCCGAACGTGTGGCTGTCGAGAGAGAAGCCATTTCCAAGTTGTTGAAGGATGAGCGTGATAGCTTAAGATTAGAAAA GGAAACGATGCGTAACGAACATGATCGTGATGTCGAGTTGTTGAATAGTGAGCGGGAGAAATTCATGAATAAGATGATTCATGAGCGCTCCGACTTGTTT AACAAGATTCAGAAGGAGCACACGGATTTCTTGTTGGGAATAGAGGTGCGGAAGAGGGAATTGGAGAATAGCATTGAAAAGAGACGCGAAGAAGTCGAAT GTTATCTTAAAGACAAGGAGAAAGCTTTTGATCTCGAGAAAAGGAATGAAATGGAGAACATACACTCTCTCAAAGAAAAGGCAGAGCGAGAACTGAAGCA AGTGGCTCTGGAAATGGAGAAGCTTGATGCTAAGAGACAAGAGCTTCTTGGGGATCGTGAACATATGGAGAAAGAGTGGGCGGTATTAAGCGGCTCTATT GAGGAACTCAAGAGTCAAACGGAGAGACTGCAGAAGCAGAGGGAATTGCTTCACGTCGAGAGTCAAGAAGTATCTACTCAAATCGAGGATTTGAAAAGGC TGGAAGATTTGAAACTTAAACTGGAGAATATGGAAGTAGCTCAAATGCAATTGTCGAGCATTGAACGTAGCCAGCAGAAGCTCTCCGAAATAAAGTATCT CAGGCAACATGCTATAGTGAATAATGGATCCGCGGAGGTTCAAAGACATAATCTTGCTTCACCTGGTAGTTCTTCTGCTCGTTTCTCGTGGATAAAACGT TGCGCTGATGTTATTTTCAAGAATTCTCCTGAGAACTTGAAGAGTGAAGAGAAAGTGATTGTGGAAGTTCCCTCTGTGCTTAAGGTTGGCTGGAAAAGGA GAGTAAATGACTCTTCTTTCGAAAATCCCGCTGAGCCCGAGTCCAGCAGCCAGAACCCCAGTAATAAGAAACAACGGCAGCAACCGCTACTGGAAGGGGG GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNAAGAAAAGGAAAGGGGGGAGAAAACAGTCGGGGGTAGGACAAGGTCAAAAACAGAGGCGGTGGTAGCAGCATAG
AA sequence Show only first row Show all	>Lus10011568 pacid=23140386 polypeptide=Lus10011568 locus=Lus10011568.g ID=Lus10011568.BGIv1.0 annot-version=v1.0 MASPIMPSSSGSSRALSLTPGARVKPVSDDSTIWMRLKEAGFDENSIQRRDKAALISYIAKLETENFDLQHHMGLLLLERKESSEKYTQLEATAEASDLL RRREQAAHATALAEAKKREESLKKALGVEKECISSIEKTLHEMRAECAETKVAAESKLVEAHNMVEETQKKIVDAEEKLRTAESLQVEANCSKRAADRKL QEVEARERDLTRRMSEFKSDCNAREKEVDLERQHLSERRKFLQQEHERLLDGQMLLNQREDYIASKSQELSRVENELEVSRAKLEEERRRLKEEKSKLEL AMASLSQREQALAERENNLNKRERDLLVMQEKLACKESAAIRKVSANHEAILRTRKSELEAELQVRRKEFEDELESKRRACELREVDLSQREDELREKEH ELDAQTRGLAEKEKDVAEKISIVDEKEMRLVNAEKDIEIKTTLLHKEAEEIKRIKLELQESLVSLEDKRLQVDSAKDKLETMKTETHELSDLEVRLKEEV DLVRAQKVELLTEEERLKVEKSKFEAEWELIDEKREELRKEAERVAVEREAISKLLKDERDSLRLEKETMRNEHDRDVELLNSEREKFMNKMIHERSDLF NKIQKEHTDFLLGIEVRKRELENSIEKRREEVECYLKDKEKAFDLEKRNEMENIHSLKEKAERELKQVALEMEKLDAKRQELLGDREHMEKEWAVLSGSI EELKSQTERLQKQRELLHVESQEVSTQIEDLKRLEDLKLKLENMEVAQMQLSSIERSQQKLSEIKYLRQHAIVNNGSAEVQRHNLASPGSSSARFSWIKR CADVIFKNSPENLKSEEKVIVEVPSVLKVGWKRRVNDSSFENPAEPESSSQNPSNKKQRQQPLLEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKERGEKTVGGRTRSKTEAVVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	0	1
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	1.0	0.9236
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	2.0	0.9084
AT5G22450			unknown protein		Lus10004878 [exp]	2.4	0.9015
AT2G24530			unknown protein		Lus10042444 [exp]	4.4	0.8515
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	4.6	0.8801
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	6.0	0.8636
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	6.3	0.8783
AT3G45830			unknown protein		Lus10018121 [exp]	7.2	0.8889
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	7.3	0.8751
AT3G14470			NB-ARC domain-containing disea...		Lus10039549 [exp]	8.1	0.8492

Compare expression of checked genes

Lus10011568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.