Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22800 139 / 3e-40 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G37790 138 / 8e-40 HD HAT22 Homeobox-leucine zipper protein family (.1) AT5G06710 136 / 2e-38 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G16780 129 / 4e-36 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT3G60390 128 / 1e-35 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT2G44910 124 / 3e-34 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT5G47370 123 / 5e-34 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G17460 116 / 2e-31 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G01430 111 / 2e-29 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 102 / 1e-26 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019256 [exp] 291 / 1e-100 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10021064 [exp] 139 / 3e-40 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 140 / 1e-39 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10004759 [exp] 136 / 2e-38 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 135 / 3e-38 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10016254 [exp] 134 / 3e-37 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 132 / 1e-36 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10040175 [exp] 125 / 2e-34 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 124 / 4e-34 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008200 [exp] 150 / 1e-44 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.005G147100 [exp] 145 / 3e-42 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.002G113400 [exp] 130 / 9e-37 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.006G193700 [exp] 131 / 1e-36 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 131 / 1e-36 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 126 / 5e-36 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 130 / 8e-36 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.001G155100 [exp] 128 / 1e-35 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.009G023600 [exp] 128 / 4e-35 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.003G079800 [exp] 126 / 5e-35 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10011569 pacid=23140393 polypeptide=Lus10011569 locus=Lus10011569.g ID=Lus10011569.BGIv1.0 annot-version=v1.0 ATGGATGATAACAACCTTCTCCTAAATCTAACTCTCTCCACTCATCGCCATTTCCCCGCCGCCGGTAAGCCTCAAGACAACTCCGTTGACGTGGGGCCTT CCCTCACCCTGTCCCTCCTCTCCAATCCCCGGCAACAGAATCCGGAGTCGGTGAAGAAGGAGAGGGAGATTGTTATTAGCAGTACGGATGATGACGATGA GGAAGCGGACACGACGACGAGGGTGTCGTCCGGTAAGGTTAGCAACGAAGATGACGGCGGCGGTGGATTGAGGAAGAAGCTCCGGCTGACTAGGGATCAG TCGGCTATGTTGGAGGAGAGTTTCAAGCACCATTCTACTCTTAGCCCTAAGCAAAAGCAAGATCTAGCGAGGCAATTAAACCTACGTCGGAGACAAGTCG AAGTTTGGTTCCAGAACAGGCGAGCCAGGTCAAAGCTCAAGCAGACCGAACTCGACTGCCAGCTCCTCAAGAAGTGCTACCAGTCGCTTACCGATGAGAA CAACAAGCTAAAGAAAGAGGTTCATCAACTCAAGACGGCGGCATCAGTCGAGACGGCGCCGTTTTACAGCATGACAGTCGCTCTGTGCCCGTCGTGTGGG ACCAAGGGCCACGGCGGCGGCGGGGGCGGCGGCGGGGGGGGGGGGTTTTCTAAATCATTCACGAATCCATCGTCAAGTACTGCGTGTTAA
AA sequence Show only first row Show all	>Lus10011569 pacid=23140393 polypeptide=Lus10011569 locus=Lus10011569.g ID=Lus10011569.BGIv1.0 annot-version=v1.0 MDDNNLLLNLTLSTHRHFPAAGKPQDNSVDVGPSLTLSLLSNPRQQNPESVKKEREIVISSTDDDDEEADTTTRVSSGKVSNEDDGGGGLRKKLRLTRDQ SAMLEESFKHHSTLSPKQKQDLARQLNLRRRQVEVWFQNRRARSKLKQTELDCQLLKKCYQSLTDENNKLKKEVHQLKTAASVETAPFYSMTVALCPSCG TKGHGGGGGGGGGGGFSKSFTNPSSSTAC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	0	1
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	1.0	0.9653
AT5G19970			unknown protein		Lus10019451 [exp]	2.0	0.9485
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	4.2	0.9413
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	6.0	0.9466
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	7.2	0.9341
AT2G20030			RING/U-box superfamily protein...		Lus10009511 [exp]	11.9	0.9107
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	13.6	0.9199
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	14.0	0.9178
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	14.4	0.9180
					Lus10025897 [exp]	14.5	0.9152

Compare expression of checked genes

Lus10011569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.