Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37810 71 / 1e-16 unknown protein AT5G10310 37 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019254 [exp] 119 / 1e-35 AT4G37810 74 / 5e-18 unknown protein Lus10007240 [exp] 66 / 5e-14 AT4G37810 75 / 2e-17 unknown protein Lus10028241 [exp] 62 / 1e-13 AT4G37810 74 / 2e-18 unknown protein Lus10011591 [exp] 59 / 4e-12 AT4G37810 102 / 6e-29 unknown protein Lus10025740 [exp] 45 / 8e-07 AT5G10310 100 / 2e-28 unknown protein Lus10035922 [exp] 43 / 5e-06 AT5G10310 100 / 2e-28 unknown protein Lus10008387 [exp] 43 / 8e-06 AT3G13898 76 / 9e-19 unknown protein Lus10006016 [exp] 44 / 9e-06 AT3G13898 76 / 4e-17 unknown protein Lus10006616 [exp] 37 / 0.0003 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112900 [exp] 63 / 1e-13 AT4G37810 90 / 9e-24 unknown protein Potri.003G042300 [exp] 41 / 4e-05 AT3G13898 80 / 4e-20 unknown protein Potri.007G095400 [exp] 40 / 7e-05 AT5G10310 105 / 2e-30 unknown protein Potri.018G130700 [exp] 37 / 0.0005 AT1G80133 62 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011570 pacid=23140431 polypeptide=Lus10011570 locus=Lus10011570.g ID=Lus10011570.BGIv1.0 annot-version=v1.0 ATGAGCTTGAGCTACTCCTCTGGCCGCCATAGCCGTTCCTCGATCCCGACCTGGTTCGCAATACTTCTCTTGATTTCGAGCTCGGCCCAACTGAGTTTCC ATGCAGAAGCAGGCAGACTAATTATCGGATCAAGGCCGCCAAGATGCAACGACAGAATTAGGTGCAGTTCTTGCGGTGATCGATGTGAAGCGATTCAGGT TCCGGTGAATGCGCAGGCGAAACGGATTCGAGGAGCCGCTACTGCGGAGTTGTCGTCCTCTGTTAGTGGAACAGAGGAGTACGGCGGCGGCGGAGGAGAG TTCCGGTACGATTACAAGCCGATGAGATGGAAATGCAAGTGCGGCAACTCAATTTTCAGCCCTTAG
AA sequence Show only first row Show all	>Lus10011570 pacid=23140431 polypeptide=Lus10011570 locus=Lus10011570.g ID=Lus10011570.BGIv1.0 annot-version=v1.0 MSLSYSSGRHSRSSIPTWFAILLLISSSAQLSFHAEAGRLIIGSRPPRCNDRIRCSSCGDRCEAIQVPVNAQAKRIRGAATAELSSSVSGTEEYGGGGGE FRYDYKPMRWKCKCGNSIFSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37810			unknown protein		Lus10011570 [exp]	0	1
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	1.4	0.8439
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	2.2	0.8128
AT1G50660			unknown protein		Lus10043111 [exp]	4.7	0.8437
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	5.7	0.8213
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10037349 [exp]	8.5	0.7416
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	10.0	0.8210
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	10.6	0.8084
AT1G12790			unknown protein		Lus10003529 [exp]	11.2	0.7586
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	13.4	0.8100
AT2G26470			unknown protein		Lus10038230 [exp]	13.6	0.7938

Compare expression of checked genes

Lus10011570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.