Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37820 111 / 3e-25 unknown protein AT4G33740 92 / 3e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019253 [exp] 643 / 0 AT4G37820 110 / 3e-25 unknown protein Lus10020507 [exp] 106 / 2e-23 AT4G33740 103 / 1e-23 unknown protein Lus10012453 [exp] 105 / 3e-23 AT4G33740 95 / 1e-20 unknown protein Lus10007239 [exp] 61 / 1e-10 AT2G22795 59 / 9e-11 unknown protein Lus10028240 [exp] 61 / 2e-10 AT2G22795 59 / 1e-10 unknown protein Lus10014955 [exp] 54 / 5e-07 AT5G52530 49 / 1e-05 dentin sialophosphoprotein-related (.1.2.3) Lus10038838 [exp] 52 / 3e-06 AT5G52530 70 / 2e-11 dentin sialophosphoprotein-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008600 [exp] 146 / 8e-36 AT2G22795 103 / 2e-22 unknown protein Potri.009G083900 [exp] 109 / 1e-24 AT4G33740 94 / 2e-20 unknown protein Potri.001G288800 [exp] 104 / 7e-23 AT4G33740 93 / 7e-20 unknown protein Potri.002G112800 [exp] 75 / 2e-14 AT4G37820 83 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011571 pacid=23140399 polypeptide=Lus10011571 locus=Lus10011571.g ID=Lus10011571.BGIv1.0 annot-version=v1.0 ATGTTCAAGTCCTCGCCGCGAAGGGGGCCGAGAACGAAAGGCTTCAAAGTGAAGCATGCTCTACAGCTATGTGTCCTGCTAGGTGTTTGCATCTGGCTGA TTTATCAAGTGAAGCATTCTCACGAGAAGAAGGGTGAGTTGGAGGGCAATGTGAAGTCTGGGAATGATGTACTGAAGCTTGGGAGGAAGGATCTCCTCCA GCCGGAAGTTGATGAAACTGTGACGAGGGATGATCAGCCATTGAAGTATGAAGAGGAAGAGAGCAAGCCGGATGAGAATTCAGGAGGGATAATCCCGGAG GAAGAATCTCAGAGCCATTTCAGTGACAAGACGGAGCAGGGAGCTGACCATGGAAATGAAGAGAAGGAAGACGAGACAGAGAATAATACTAGTCAGGATA CTGTTAATGAAGGAGAGACCAAGGTGGAGGAGTCCAATGAAGAGACCAATGTGAACGATGGTGAAGCTGTAGGTACTGGAGATGGACGACAGGGGGAGAA TGAACAAAATAACATCGGCAAGGAGAGTGCTGGCGAAGAGAATAGTCAGGAATCTGGAGAGCACATGAGCGATGAGAATGGGAATGTTGAGGGAAGTGGG GAGAAGAAACTCGAAGAGGTTACAGAAAATAAAGGGTCGGAAACAGATGTATCGGAGACATCAACAGAGCAGAAGGAACACGATGAGGATGATGGACACA GTAAGGAGGCAAGAGAGGAGCATTACAATGGTGACGATGCTTCTAGCGCAGTAGTCCATGAAGATCAAAATGTTAAACCAGAGGAGACGACTCAACAGTC AGAGAGCAAAGATAATGAACAAACGAATACGAGTCAAGCTGGTGAAGTGAATCAAAATGAGGTCTCAAATGGTAACGAAGAGGAGACTGCTCAGAGTCAA GTCGATACATCCTCGAACAATAAGCAAGAGACATCAACAACGGAAGATTCGTCTGAAAACCAGGGTGCATCATCGTCACAAAATGCAGAGACTGCTCAGA ATCAAGTCGATACATCCTCGAACAACAAGCACGAGACATCAGCAACAAAAGATGTGTCTGAAAACCAGGGCGCATCATCGTCGCAAAATGCAGAGGAGAC TGCTCAGAATCAAGTCGATACATCCTCGAACAACCAGCACGAGACATCAGCAACAAAAGATGTGTCTGAAAACCAGGGCGCATCATCGTCGCAAAATGCA GAGGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACCAGCACGAGACATCAGCAACAAAAGATGTGTCTGAAAACCAGGGCGCATCATCGTCGC AAAATGCAGAGGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACCAGCACGAGACATCAGCAACAAAAGATGTGTCTGAAAACCAGGGCGCATC ATCGTCGCAAAATGCAGAGGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACAAGCAAGAGACATCGACAACAGAAGATTCGTCTGAAAACCAG GGTGCATCATCGTCACAAAATGCAGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACAAGCAAGAGACATCGACAACAGAAGATTCGTCTGAAA ACCAGGGTGCATCATCGTCACAAAATGCAGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACAAGCAAGAGACATCGACAACAGAAGATTCGTC TGAAAACCAGGGTGCATCATCGTCACAAAATGCAGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACAAGCAAGAGACATCGACAACAGAAGAT TCGTCTGAAAACCAGGGTGCATCATCGTCACAAAATGCAGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACAAGCAAGAGACATCGACAACAG AAGATTCGTCTGAAAACCAGGGTGCATTATCGTCACAAAATGCAGAAACTGCTCAGAATCAAGTCGATACATCCTCGAACAACAAGCAAGAGACATCGAC AACAGAAGATTCGTCTGAAAACCAGGGTGCATCATCGTCACAAAATGCAGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACAAGCAAGAGACA TCGACAACAGAAGATTCATCTGAAAACCAGGGTGCATCATTGTCACAAAACGCAGAGGAGACTGCTCAGAATCAAGTCGATACATCCTCGAACAACCAGC AAGAGACATCAACAACAGAAGATGTGTCTGAAAACCAGGGCGTATCATTGTCGCAAAATGCAGAGGAGACTGGTCAGAATCAAGTTGATACATCCTCGAA CAATGCAGATGGAACAGCTCAGAATGAAGTTGGCACTTCAGAGGGTTCATCATCTGGCGGTGAAGAACAGTCGTCGGTAGATAAAGTAACAGAGAAATCG GACACAGACAGTAACAGCCAGCAAGTAGATTCTTCAACCACTACCACAGCCACAGAGAATGGAGATTCGAGTGCTTCTGATGATAAGTCTGGTTCTGCGG TATCAGATAAACAGTCTGAAACTTCCAGTGAAACATTGCCAGCAAGTGAAACTTCTGTCGATGCAGAGAAAAAGGAACAAGTTGATTCTTCTTCGCAATC CCAAGAGCAATCAACAACACCCTCAAACACAAATGATTCTGCTGCCAACGCTGACATCAATCAAGCTTCTTCCGATTCATCAAGCTCTGAAGCAGCAAAC GACAATGGTGGCCAGAACAACAGTGGTGAATCTGTTGCAGCCAGCAACAATGACAGTGATGGAAACAAGAGTGACGACAGCAATGTGAATCAAGATGCGA GTCATACGGACACCAGCAACAATGGAGGAAGCACTGAGAATCAGTCCAAAGATGAAAGCCAGACTGAGAAAGCCAGCACAAGCTCGACCGATGTTAGCCA GGACAACAATGACACCAACGTAAACGAAAACAAAGACGGGAGCCAAACACAAGACGTTGACTCATCAGGGTCTTCAACAGCAAACAGCAGTACAGAGGAG ACCCAGACCGAAGGAAGTGGCTCAGTCGATACATCTGGAAGTTCGTCAGTTTCGAAAGAGACAAGTGGTGATCATACTGGTGCTGCAGCTGAATGA
AA sequence Show only first row Show all	>Lus10011571 pacid=23140399 polypeptide=Lus10011571 locus=Lus10011571.g ID=Lus10011571.BGIv1.0 annot-version=v1.0 MFKSSPRRGPRTKGFKVKHALQLCVLLGVCIWLIYQVKHSHEKKGELEGNVKSGNDVLKLGRKDLLQPEVDETVTRDDQPLKYEEEESKPDENSGGIIPE EESQSHFSDKTEQGADHGNEEKEDETENNTSQDTVNEGETKVEESNEETNVNDGEAVGTGDGRQGENEQNNIGKESAGEENSQESGEHMSDENGNVEGSG EKKLEEVTENKGSETDVSETSTEQKEHDEDDGHSKEAREEHYNGDDASSAVVHEDQNVKPEETTQQSESKDNEQTNTSQAGEVNQNEVSNGNEEETAQSQ VDTSSNNKQETSTTEDSSENQGASSSQNAETAQNQVDTSSNNKHETSATKDVSENQGASSSQNAEETAQNQVDTSSNNQHETSATKDVSENQGASSSQNA EETAQNQVDTSSNNQHETSATKDVSENQGASSSQNAEETAQNQVDTSSNNQHETSATKDVSENQGASSSQNAEETAQNQVDTSSNNKQETSTTEDSSENQ GASSSQNAETAQNQVDTSSNNKQETSTTEDSSENQGASSSQNAETAQNQVDTSSNNKQETSTTEDSSENQGASSSQNAETAQNQVDTSSNNKQETSTTED SSENQGASSSQNAETAQNQVDTSSNNKQETSTTEDSSENQGALSSQNAETAQNQVDTSSNNKQETSTTEDSSENQGASSSQNAETAQNQVDTSSNNKQET STTEDSSENQGASLSQNAEETAQNQVDTSSNNQQETSTTEDVSENQGVSLSQNAEETGQNQVDTSSNNADGTAQNEVGTSEGSSSGGEEQSSVDKVTEKS DTDSNSQQVDSSTTTTATENGDSSASDDKSGSAVSDKQSETSSETLPASETSVDAEKKEQVDSSSQSQEQSTTPSNTNDSAANADINQASSDSSSSEAAN DNGGQNNSGESVAASNNDSDGNKSDDSNVNQDASHTDTSNNGGSTENQSKDESQTEKASTSSTDVSQDNNDTNVNENKDGSQTQDVDSSGSSTANSSTEE TQTEGSGSVDTSGSSSVSKETSGDHTGAAAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37820			unknown protein		Lus10011571 [exp]	0	1
AT1G63300			Myosin heavy chain-related pro...		Lus10001482 [exp]	2.8	0.9146
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	3.5	0.9215
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10025800 [exp]	7.2	0.9014
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	8.1	0.8846
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	11.0	0.8898
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	12.7	0.9017
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	14.5	0.8992
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	17.5	0.8857
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	20.8	0.8796
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	22.4	0.8752

Compare expression of checked genes

Lus10011571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.