Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65720 439 / 1e-156 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019252 [exp] 523 / 0 AT5G65720 734 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10011590 [exp] 491 / 8e-175 AT5G65720 748 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000600 [exp] 483 / 4e-172 AT5G65720 716 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Potri.008G005101 [exp] 0 / 1 AT5G65720 99 / 9e-06 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10011572 pacid=23140407 polypeptide=Lus10011572 locus=Lus10011572.g ID=Lus10011572.BGIv1.0 annot-version=v1.0 ATGAAGTTCTACAAGGAGAAGAAGAGGCATGTAATCACCACTCAGACGGAGCACAAGTGTGTATTGGATTCATGCCGCCATCTCCAGCAAGAAGGCTTCG ACGTCACTTATCTGGCCGTCAAATCCGACGGACTTGTTGATTTGGAGAATTTGCGAGCTACGATTAGGCCTGATACAGGGCTCATATCTGTAATGGCGGT GAACAATGAAATCGGAGTGATTCAACCGATGGAAGAGATCGGACGGATTTGCAAAGAGTTCAATGTCCCTTTCCACACTGATGCAGCTCAAGCATTAGGT AAGATTCCTGTAAATGCAGATGAATGGAATGTTAGTTTGATGACATTGAGTGGCCACAAAATCTACGGCCCTAAAGGAATTGAAGCTCTGTACATGAGGA GGCGACCTAGAATCAGAGTAGAACCTCAAATGAACGGAGGTGGACAAGAGAGAGGGATTCGAAGCGGAACGGTCCCGACTCCTTTAGTAGTCGGAATGGG AGCAGCCTGTGAGCTTGCGAAGAACGAAATGGCCTACGACGAGAGGAGAATCAAGGCTCTGCAAGAGGGGCTACTGAAAGGGATTGAATCAAAACTCGAT GGGATAGTAGTGAACGGGAGCGTGGAGAGGAGATACGCTGGGAACTTGACCATCTCGTTCGCGTATGTCGAATGCGAGAGCTTGTTGATGGGACTGAAGG AACTGGCGTCGAGTGGGAGTGCTTGCACCAGTGCATGCTTGGAGAGGGCGCTGGGTGTGGATGGGGACATGGCGCATACTTCGATTAGGTTCGGAATCGG GAGGTTTAAGGCCGTAACGGATGTTTAA
AA sequence Show only first row Show all	>Lus10011572 pacid=23140407 polypeptide=Lus10011572 locus=Lus10011572.g ID=Lus10011572.BGIv1.0 annot-version=v1.0 MKFYKEKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLAVKSDGLVDLENLRATIRPDTGLISVMAVNNEIGVIQPMEEIGRICKEFNVPFHTDAAQALG KIPVNADEWNVSLMTLSGHKIYGPKGIEALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGMGAACELAKNEMAYDERRIKALQEGLLKGIESKLD GIVVNGSVERRYAGNLTISFAYVECESLLMGLKELASSGSACTSACLERALGVDGDMAHTSIRFGIGRFKAVTDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	0	1
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	1.4	0.9296
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	2.0	0.9262
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	2.2	0.8867
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	3.5	0.8848
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	4.9	0.9039
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	6.3	0.8831
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	7.5	0.8763
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	8.0	0.8931
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	8.1	0.8804
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	9.4	0.8675

Compare expression of checked genes

Lus10011572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.