Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020538 [exp] 208 / 2e-61 AT2G04810 46 / 5e-05 Protein of unknown function (DUF295) (.1) Lus10035508 [exp] 117 / 7e-29 ND / Lus10019251 [exp] 99 / 1e-22 ND / Lus10022686 [exp] 97 / 3e-22 ND / Lus10035601 [exp] 79 / 2e-15 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10035492 [exp] 62 / 5e-10 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10027790 [exp] 60 / 1e-09 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003252 [exp] 52 / 9e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10011573 pacid=23140418 polypeptide=Lus10011573 locus=Lus10011573.g ID=Lus10011573.BGIv1.0 annot-version=v1.0 ATGTCAGGCAAAGCTTTCGAGACAATGGAGGATTATTATTCGCAACTTCCGGAAGAGATTATAGAGAAGATAGCGACGGAGCACTTGGATACTTCATCGG AGCTTATTTCCTTGGCCGGGGTTTGCACATCTTGGAGGTCCACCCTGTTTGAGCTCTACAACAGCCGCCGCCGCCTCCTCCATCATGTAATTCCAGGCAT CCTCAAGTCGAGAACCTCCGGTGTCGTAGAGCAACAATACTGCTCGATAACTACTCGCCATCGATTCCGACCGATCCCTGCAATATTCATCGGCATTGAT CCCGTGCGGTCCCCGCCCGGTCGAACCAGAACAAGCACGATCCACCTCCCCTTCAAAACCCTAGAAGAAAGGGAAAACGTTTACCTCAAAAAATGTCACT GCGTGGCTTCTAGAGACGGCTGGTTGGTCCTCGCCCATCCGATCAGCAGCTATGATCAATTTCAAATTTATCCGCTGACAATATACCTGCTCAACCCAGC TACGGGAGCCTCCATTCTGCTCCCTCCTCTACTACCGGACCAATTCGAATTCGGCGATTTAGGTGACGGCTCCTACTGGACTCTCCTCTCATCTTCCCCT GACGACGAGGACTGCCACATCATCATTGTAGCGGATTTGGAGGACGGGCAAAACGTTGCATGGTGCAAGGTGAGAGGCGGTCGTTGGAAATTCACAAGTA GGATTTTCGACGACGAAATTCTGTGCGCAACTTACTTTGGAGGCAAACTCTATGTCTTGGATGGTAAATATTATGTGCATGTTTTCAGTAACCTTATTAA TACGACTTCTTCAGAGGAAAAGAGTGTAGCTGCTCCAACCGTGAGACTATTTCATCTCGATGAAGGACTCGACGAAAACTATAGGTTGTACAGCCTGTTG GAACTCAATGGTGAGCTTGTTGTCATCCTAAGTAGATGCTTCTCCAATTATGATGATGTCGTCGCCAAGTTGTCCAAGCTCGTACTACTATCGAATTCGG ATCATCGTTGGGAAGAAGTGGAGAGTTTAGATGGGTATGCTGTGTTCTTAGGAACACATCAGTCTTTGTGCGTTCCTGTAAACGATAATGCGAACAACAA AAAGAAGATGATGGTCAAAAGCAACCACATTTACTATCTCATGAGAAGTTGCGGCCATTGTGATTTTGGTCACAAACAACCGGGCGAACATGGACCGCAG TATTTCTATCGTTGCACTTACAGTATTAAACTTCGAAAGTTCGTCGAACTCTCGCAATCTACTCGGGATAAGGACTACGACAATATGTGGTTCTCCCCTA TGCTATGGGACATTGGTAAGCAATTGAAGAAGCGACGGAGAAAGGATCCCGAATAG
AA sequence Show only first row Show all	>Lus10011573 pacid=23140418 polypeptide=Lus10011573 locus=Lus10011573.g ID=Lus10011573.BGIv1.0 annot-version=v1.0 MSGKAFETMEDYYSQLPEEIIEKIATEHLDTSSELISLAGVCTSWRSTLFELYNSRRRLLHHVIPGILKSRTSGVVEQQYCSITTRHRFRPIPAIFIGID PVRSPPGRTRTSTIHLPFKTLEERENVYLKKCHCVASRDGWLVLAHPISSYDQFQIYPLTIYLLNPATGASILLPPLLPDQFEFGDLGDGSYWTLLSSSP DDEDCHIIIVADLEDGQNVAWCKVRGGRWKFTSRIFDDEILCATYFGGKLYVLDGKYYVHVFSNLINTTSSEEKSVAAPTVRLFHLDEGLDENYRLYSLL ELNGELVVILSRCFSNYDDVVAKLSKLVLLSNSDHRWEEVESLDGYAVFLGTHQSLCVPVNDNANNKKKMMVKSNHIYYLMRSCGHCDFGHKQPGEHGPQ YFYRCTYSIKLRKFVELSQSTRDKDYDNMWFSPMLWDIGKQLKKRRRKDPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011573 [exp]	0	1
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	1.0	0.8886
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	2.4	0.8670
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	6.7	0.8490
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10008402 [exp]	7.2	0.8473
AT3G27030			unknown protein		Lus10032030 [exp]	11.0	0.8107
AT5G66820			unknown protein		Lus10002968 [exp]	11.5	0.8128
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	11.8	0.8434
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	11.8	0.8274
AT5G57460			unknown protein		Lus10007798 [exp]	12.7	0.8358
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10016738 [exp]	15.2	0.7887

Compare expression of checked genes

Lus10011573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.