Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22790 154 / 8e-44 unknown protein AT5G67020 134 / 2e-35 unknown protein AT3G50340 113 / 8e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019249 [exp] 382 / 1e-131 AT5G67020 141 / 2e-38 unknown protein Lus10011589 [exp] 376 / 5e-129 AT2G22790 166 / 4e-48 unknown protein Lus10019345 [exp] 92 / 8e-22 AT5G67020 248 / 2e-82 unknown protein Lus10009357 [exp] 79 / 1e-17 ND 167 / 2e-51
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008900 [exp] 280 / 7e-92 AT2G22790 153 / 2e-43 unknown protein Potri.007G044200 [exp] 147 / 3e-40 AT5G67020 537 / 0.0 unknown protein Potri.005G138300 [exp] 138 / 6e-37 AT5G67020 520 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011575 pacid=23140434 polypeptide=Lus10011575 locus=Lus10011575.g ID=Lus10011575.BGIv1.0 annot-version=v1.0 ATGGCGACCGCCACCCGCCACCACCACCGCCTCCCGAAACACAAATACTCACCCGCCACCAAGCTCCAAGTCTGCTTCTCCTACGCCGCCTACGCCAAGA AGCTAATCCACCGCCTCAAATCCTTCCACATTCAAATCCTCCCGGGCCTCACCGCCTCCGAATTCTCTGATCTCGAATCCGAATTCGGCTTCTCCTTCCC TCCTGACCTCCGCTCCGTTCTCCAAGAAGGCGTCCCTTTCGGCCCCGATTTCCCCAACTGGCGAGCCGCTTCATCTTCATCGTCAAATCTCCTCAATCTC CCGGGGTTCAATCTGTCAAGAAACATCCGCCGCCGCCGCTTCTGGGTCCGGTCGTGGGGCGACCGACCCGGAAACTGGTTCGAATTGAATTCTGCCGTCA AGAAATTGATTGACGGAGCTCCCGCTCTGGTTCCGATTTACACCAATTGCTACATCCCGGCCTCCCCTGTTGCGGCGGGGAATCCGGTGTTCTACGTTGA CGAGGAGAGTGTACGGATCTTGAGCTTCGACATTGCCGGATTCTTCCAGCAGCTGGAGATTAATCCGATTAATTCCACGGCGGGGGTGACGACGAGGAGG ATGAAGATTATTAGTGCTCTGCCGGCTTGGGCGGCGACGGCGGCCAGAGAGATCGAGTTCTGGACGGATGCGGCGGAGAAAGGAAAGACGGTGGACAACG GCGATGCCGCAGCGTGGCCTTCGGCGGGGGAGAAGGAGCTGACGGAGTGTATGGAGGAGGTGTTTTGGCGGTTGAGAGACGGTGGGTGGAGAGAAGACGA GGTGAGGGAGATGATGATGATGGACGGCTGTGATTCATCTGGCGGTTGGGATCGGACGGTGGAGGCGGAGGACGAGGAAGAGGAGGTCAGGCACGTGAGG ATGCTGTCCGCTGGGGAGCTATTGCGTGCGGGGTGGAGCAGGGAAGATGTGGTGTACTCGCTTGATTTGGAGGATTGTGATCAGGCGGCGGTGGTCGACG TGGAGAGGGAAAGAAAGTCGTCGTCATCGTGGTCGGCGGCGGCGACGTTTGACTTTCAGATTCCGAATGGGTGCGGCGGCGGCGATCGGCATAGGCGGAG GAGCCTTGGGGATTACATTGGTCTGCATTCGGTTGAACTTGAAGTATAA
AA sequence Show only first row Show all	>Lus10011575 pacid=23140434 polypeptide=Lus10011575 locus=Lus10011575.g ID=Lus10011575.BGIv1.0 annot-version=v1.0 MATATRHHHRLPKHKYSPATKLQVCFSYAAYAKKLIHRLKSFHIQILPGLTASEFSDLESEFGFSFPPDLRSVLQEGVPFGPDFPNWRAASSSSSNLLNL PGFNLSRNIRRRRFWVRSWGDRPGNWFELNSAVKKLIDGAPALVPIYTNCYIPASPVAAGNPVFYVDEESVRILSFDIAGFFQQLEINPINSTAGVTTRR MKIISALPAWAATAAREIEFWTDAAEKGKTVDNGDAAAWPSAGEKELTECMEEVFWRLRDGGWREDEVREMMMMDGCDSSGGWDRTVEAEDEEEEVRHVR MLSAGELLRAGWSREDVVYSLDLEDCDQAAVVDVERERKSSSSWSAAATFDFQIPNGCGGGDRHRRRSLGDYIGLHSVELEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22790			unknown protein		Lus10011575 [exp]	0	1
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	2.8	0.9084
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	4.5	0.8768
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10036695 [exp]	7.4	0.8591
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	11.3	0.8554
					Lus10024104 [exp]	14.0	0.8595
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	14.9	0.8434
AT5G05280			RING/U-box superfamily protein...		Lus10034228 [exp]	15.5	0.8584
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	15.5	0.8291
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022548 [exp]	15.6	0.8366
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	16.0	0.8633

Compare expression of checked genes

Lus10011575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.