Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65700 1287 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 1274 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 928 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 917 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 621 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G28440 601 / 0 HSL1 HAESA-like 1 (.1) AT4G28650 580 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 570 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 561 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65710 559 / 0 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019248 [exp] 1622 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 1360 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 957 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 950 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 870 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 869 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10035783 [exp] 853 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011585 [exp] 804 / 0 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038382 [exp] 663 / 0 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009200 [exp] 1310 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 1008 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 1002 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 941 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 932 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 922 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 654 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 630 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 622 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 615 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10011576 pacid=23140363 polypeptide=Lus10011576 locus=Lus10011576.g ID=Lus10011576.BGIv1.0 annot-version=v1.0 ATGACCGGTGACTTGCCTCTCGCCGTCGCTGAAATGCCCAACCTCCGCCACCTCCACCTCGGAGGGAACTTCTTCGGCGGGGAGATCCCGCCGCAGTACG GACAGTGGGAGTTCATCGAGTACCTCGCTCTCTCCGGTAACGAGCTAGTCGGAAGAATCCCGCCGGAGATCGGAAACCTAACCAGCCTCAAACAGCTCTA CCTCGGGTACTACAACAGTTACCAAAGCAGCTTGCCTGCCGAGATCGGAAACCTAACGAACTTAATCCGCCTCGACGTCGCGAACTGCAACCTCTCCGGC GAAATCCCGCCGGAGATCGGCAACCTCCAAAACCTCGACACATTGTTCCTCCAAGTCAATTCCCTCACCGGTCTTCTCCCCTCAGAGCTCAGCAATCTGA AGAGCTTGAAATCATTAGATCTCTCCAACAACATTCTGGAAGGAGAAATCCCAGAGTCTTTCTCCGAGCTCAAGAACTTAACTTTACTCAACCTATTCAG AAACGATCTCCACGGAACAATCCCGGAGTTCATCGGCGAGCTCCCGGAGCTCGAAACGCTAAACCTCTGGGAGAATAACTTCACCGGAACCATCCCTCAA GGGTTAGGCCAGAACGGGAAGCTAATCAGACTAGATCTCTCTTCCAACAAGCTCACTGGATTTCTCCCACCAGATCTCTGCTCAGGTAACCGATTAGAAA TCCTAATCACTCTCAGCAACTTCCTATTCGGTCCGATTCCTGATTCGTTAGCTTCATGCGATTCGCTTACTCGGATCCGAATGGGGGAGAATTTCTTAAA CGGATCTATCCCGTCGGATCTTTTCGGATTACCGGCGCTTGCTCAAGTCGAGCTACAAGACAATCTATTAACCGGAGAGTTTCCGGTAAGTAAAAACAAA GCACTCGGTCAAATCAGTCTCTCTAACAATCAGTTAACCGGTTCGTTACCGGCGACGATCGGAGACTTCTCCAACATCCAGAAGCTACTTTTGGATGGTA ATCAGTTCACCGGTTCGATTCCATCCGAAATCGGGAAGCTACAGCAGCTTTCGAAGATTGATTTCAGGCACAACAAGTTTTCCGGTCGGATTACGCCGGA GATTAGTAAATGCAAAGTGTTGACTTTCGTTGACCTTAGTCGGAACTCGCTCTCCGGCGAGATTCCGACGGAGATAACAGAGATGAAGATGTTAAACTAC TTAAACGTCTCGAGAAACGATCTGACGGGTGAAATCCCGCCGTCGATTTCCACAATGCAGAGCTTGACATCGGTTGATTTCTCTTACAACAATCTATCCG GATTGGTACCAGCAACCGGCCAATTCAGCTACTTTAACTCCACTTCGTTCATGGGGAATCCTTATCTCTGTGGACCTTATTTAGGTGCTTGCAAAAATGG CGTCGCAGCAAATGTAACGCATAATGCTGGTAAAGGGAAGCTATCTGGTTCTTTGAAACTGTTCCTGGTAATTGGTTTGCTGGTATGTTCGATTGCGTTT GCAATCGCAGCTATAGTAAAGGCGAGATCTTTGAAAAAGGCAAGCGATTCTCGAGCTTGGAAGATGACAGCATTCCAGCGTCTCGACTTCACAGTCGACG ACGTGCTGGAATGCTTGAAAGAGGAGAACATCATAGGGAAAGGCGGCGCTGGAATCGTCTACAAAGGCTCAATGATCGGTGGCGATCATGTCGCGGTAAA GAGGCTACCTTCGATGACTCGAGGGGGATCGAATCATGATCATGGATTCAACGCTGAGATTCAAACACTAGGTAGGATTCGTCATAGACACATCGTTAGG CTGTTGGGATTTTGTTCGAATCACGAGACGAATCTCTTGGTCTATGAGTATATGCCGAATGGAAGCCTTGGCGAAGTACTCCATGGCAAGAAAGGTGGAC ATCTGCATTGGAACATTCGGTACAAGATTGCTGTGGATTCCGCCAAGGGTCTTTGCTACCTTCATCATGATTGTTCGCCGTTGATTGTTCATCGCGACGT AAAGTCGAATAACATTCTGTTGGATTCGGGGTTCGAAGCTCATGTTGCTGATTTCGGCCTGGCCAAGTTCTTGCAGGATTCTGGCACTTCTGAGTGCATG TCTGCTATTGCTGGATCATATGGATACATTGCTCCAGAGTACGCCTACACGTTGAAAGTCGACGAGAAGAGCGATGTGTACAGCTTCGGAGTGGTTCTGC TCGAGCTGATCGCGGGGAGGAAACCCGTTGGGGAGTTCGGAGACGGAGTGGACATAGTCCAGTGGGTTCGAAATATGACGGATTCAAACAAGGAGAGCGT GCTCAAAGTGTTGGACCCACGCTTATCGTCGGTGCCTCTCGACGAGGTCATGCACATGTTCTACGTAGCGATGCTGTGCGTCGAGGAGCAGGCTGTGGAG AGGCCTACGATGAGGGAGGTCGTTCAGATGCTATCCGAGCATCCGAAACCACCACCTGGTTCGAAACAAGCCGTGGAAACCGATTCGTTGGTGATCACCG TAGACTCGCCAGGGTCGGGTTCGACTCTAGACTCTCCTGATGCAGCAACAACAAGCAGCAAAGATACCAAAGAGGAGCAGCAGAATCATCCACCTGATCT TCTCAGCATTTGA
AA sequence Show only first row Show all	>Lus10011576 pacid=23140363 polypeptide=Lus10011576 locus=Lus10011576.g ID=Lus10011576.BGIv1.0 annot-version=v1.0 MTGDLPLAVAEMPNLRHLHLGGNFFGGEIPPQYGQWEFIEYLALSGNELVGRIPPEIGNLTSLKQLYLGYYNSYQSSLPAEIGNLTNLIRLDVANCNLSG EIPPEIGNLQNLDTLFLQVNSLTGLLPSELSNLKSLKSLDLSNNILEGEIPESFSELKNLTLLNLFRNDLHGTIPEFIGELPELETLNLWENNFTGTIPQ GLGQNGKLIRLDLSSNKLTGFLPPDLCSGNRLEILITLSNFLFGPIPDSLASCDSLTRIRMGENFLNGSIPSDLFGLPALAQVELQDNLLTGEFPVSKNK ALGQISLSNNQLTGSLPATIGDFSNIQKLLLDGNQFTGSIPSEIGKLQQLSKIDFRHNKFSGRITPEISKCKVLTFVDLSRNSLSGEIPTEITEMKMLNY LNVSRNDLTGEIPPSISTMQSLTSVDFSYNNLSGLVPATGQFSYFNSTSFMGNPYLCGPYLGACKNGVAANVTHNAGKGKLSGSLKLFLVIGLLVCSIAF AIAAIVKARSLKKASDSRAWKMTAFQRLDFTVDDVLECLKEENIIGKGGAGIVYKGSMIGGDHVAVKRLPSMTRGGSNHDHGFNAEIQTLGRIRHRHIVR LLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWNIRYKIAVDSAKGLCYLHHDCSPLIVHRDVKSNNILLDSGFEAHVADFGLAKFLQDSGTSECM SAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGVDIVQWVRNMTDSNKESVLKVLDPRLSSVPLDEVMHMFYVAMLCVEEQAVE RPTMREVVQMLSEHPKPPPGSKQAVETDSLVITVDSPGSGSTLDSPDAATTSSKDTKEEQQNHPPDLLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011577 [exp]	1.0	0.8020
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10028170 [exp]	1.4	0.7960
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	5.2	0.7798
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	12.5	0.7212
AT3G63480			ATP binding microtubule motor ...		Lus10029983 [exp]	18.2	0.7353
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10006625 [exp]	27.6	0.7022
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	28.2	0.6678
AT5G62440			Protein of unknown function (D...		Lus10024794 [exp]	29.8	0.5434
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	34.3	0.6831
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	35.6	0.7112

Compare expression of checked genes

Lus10011576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.