Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65700 180 / 2e-51 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 170 / 1e-47 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 108 / 2e-26 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 100 / 2e-23 ERL1 ERECTA-like 1 (.1.2) AT5G46330 97 / 3e-22 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G73080 96 / 6e-22 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT3G47570 95 / 7e-22 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 92 / 5e-21 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 92 / 1e-20 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 91 / 2e-20 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019248 [exp] 295 / 9e-93 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011585 [exp] 239 / 2e-72 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 236 / 3e-71 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 113 / 6e-28 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 112 / 2e-27 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10040592 [exp] 108 / 1e-26 AT1G75820 642 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10035429 [exp] 105 / 2e-25 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 100 / 1e-23 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 99 / 3e-23 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009200 [exp] 219 / 3e-65 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 115 / 9e-29 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 114 / 2e-28 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G037400 [exp] 110 / 6e-27 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G241500 [exp] 108 / 2e-26 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 107 / 7e-26 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G045500 [exp] 106 / 8e-26 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G060100 [exp] 104 / 5e-25 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 103 / 6e-25 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 103 / 1e-24 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011577 pacid=23140427 polypeptide=Lus10011577 locus=Lus10011577.g ID=Lus10011577.BGIv1.0 annot-version=v1.0 ATGAGACTCCTTTACCCTCTCCTCTTCTTCTTCCTCCTCATCCACCTCCACATCCCAACTTCCACCGGCCGCGTATTATCCGAAACCCAAGCTCTACTCT CCCTAAAATCCGCCGTCACCGACGACCCAAACTCCTTCCTTTCCGCCTGGAACTCCTCCGCCGACCTCTGCTCCTGGCCGGGAGTCACGTGCGACTTCTC CAGCCGTCACGTGACCTCATTAGACCTCTCTAGCCTCTCCCTCACGGGAACCCTCTCCCCGGATATCTCCCACCTCCGCTACCTCCAGAACCTCTCCCTC GACGTCAACAAATTCTCTGGCCCCATCCCGCCGCAGCTCTCCGCCGCCACCGACCTCCGCTACCTCAATCTCTCCAACAATGGGTTTAATGATACTTTCC CCTCGCAGCTAGCCCAGCTCAAGAACCTCGAGGTACTCGACATCTACAACAACAATATGACCGGTGACTTGCCTCTCGCCGTCGCTGAAATGCCCAACCT CCGCCACCTCCACCTCGGAGGGAACTTCTTCGGCGGGGAGATCCCCCCGCCGGACGGGCAGTGTGAGGTGTTCTTCTCAATCTACGATGAGACTCCTTTA CCCTCTCCTCTTCTTCTTCCTCCTCATCCACCTCCACATCCCAACTTCCACCGGCCGCGTATTATCCGAAACCCAAGCTCTACTCTCCCTAAAATCCGCC GTCACCGACGACCCAAACTCCTTCCTTTCCGCCTGGAACTCCTCCGCCGACCTCTGCTCCTGGCCGGGAGTCACGTGCGACTTCTCCAGCCGTCACGTGA CCTCATTAGACCTCTCTAG
AA sequence Show only first row Show all	>Lus10011577 pacid=23140427 polypeptide=Lus10011577 locus=Lus10011577.g ID=Lus10011577.BGIv1.0 annot-version=v1.0 MRLLYPLLFFFLLIHLHIPTSTGRVLSETQALLSLKSAVTDDPNSFLSAWNSSADLCSWPGVTCDFSSRHVTSLDLSSLSLTGTLSPDISHLRYLQNLSL DVNKFSGPIPPQLSAATDLRYLNLSNNGFNDTFPSQLAQLKNLEVLDIYNNNMTGDLPLAVAEMPNLRHLHLGGNFFGGEIPPPDGQCEVFFSIYDETPL PSPLLLPPHPPPHPNFHRPRIIRNPSSTLPKIRRHRRPKLLPFRLELLRRPLLLAGSHVRLLQPSRDLIRPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011577 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	1.0	0.8020
					Lus10018299 [exp]	5.5	0.6279
AT3G63480			ATP binding microtubule motor ...		Lus10029983 [exp]	13.3	0.7268
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	17.3	0.6795
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	28.1	0.6393
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10021998 [exp]	30.6	0.6140
					Lus10028008 [exp]	35.9	0.5391
AT4G37810			unknown protein		Lus10011570 [exp]	41.7	0.6567
AT1G12790			unknown protein		Lus10003529 [exp]	51.2	0.6268
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	52.2	0.6294

Compare expression of checked genes

Lus10011577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.