Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 197 / 2e-61 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22760 191 / 3e-59 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 187 / 1e-57 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22770 177 / 1e-53 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 87 / 9e-19 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G12860 80 / 2e-16 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 77 / 2e-16 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G46510 77 / 1e-15 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT2G16910 77 / 1e-15 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 76 / 4e-15 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019247 [exp] 429 / 7e-152 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 218 / 1e-68 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 204 / 1e-64 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 201 / 2e-63 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 199 / 1e-61 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006085 [exp] 192 / 2e-60 AT2G22760 72 / 6e-15 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 174 / 1e-51 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009726 [exp] 112 / 2e-30 AT4G37850 63 / 2e-12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 87 / 5e-19 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095250 [exp] 217 / 5e-69 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G287200 [exp] 216 / 9e-69 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 216 / 1e-68 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 191 / 2e-58 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 87 / 7e-19 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 83 / 1e-17 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 79 / 3e-16 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G172101 [exp] 77 / 1e-15 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G136300 [exp] 76 / 2e-15 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 76 / 4e-15 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011578 pacid=23140430 polypeptide=Lus10011578 locus=Lus10011578.g ID=Lus10011578.BGIv1.0 annot-version=v1.0 ATGGAAGTTCTTCAGACTGAATGGATGCCTGAGTTGTCCAGTGATATGAACAACAACAGTAGACCTGCCAAGATTCCCAAGACGACGAACAATTCGAGTA GAGCTTCTCCTCCTTCGTCGTCTTCCTCACCTTACTCGTGCATTATCTCGTTCGATAGCTCTAGCAGCACCGATTCGGTTCCAGCTGTTCCTCAAAAGCC ACCGAGATCCTATCCTCCAGCAGCCGTTATTAAGCCCGAGTATTCATCGATCGAAAACGGTCTTCAGTATGGCTGCTCGGTGTTGAATAATGCTACTACT AGCCATGGCACTAAAAGACCTGCAGCTGCAATGAGTAGGAGTCCGATTAGTGCGCAGGATCATGTCATGGCTGAGAGGAAGCGTCGCGAGAAGCTCAGCG AACGGTTCATCGCTCTCTCAGCTGTCGTTCCTGGCCTCAAGAAGACTGACAAGGCATCAGTACTAGGAGACGCGATCAAGTACCTGAAGCAACTCCAAGA GCGAGCCAAGACGCTCGAGGAGCAAGTAAAGAGGAAGACAATTGAATCAGTAGTCTATGTGAAGAAGTCTCGAGTATACAACCTCGACGACGACGAATTA TCATCATCAACAGATGAGAATTCGGATGGCTTTTCATCCAACCAATCTCTGCAGCTTCCGGAGATTGAAGCTAGAGTCTCGGGAAAAGATGTCATGATCA GAATCCACTGCGAGAAACAGAAAGGATGCCTCCCGAAGCTACTCTGTGAGATCGAGAAGCTCGGTCTCAATGTCATGAACAGCAACGTCTTGCCATTCGG GAGCTCCACCCTCGACATAACCGTCGTCGCTCAGATGGACCATGATTTCTCCACTACAACAATAGATCTTGTGAGGAATCTAAGAAAAGCTCTGAAGTAG
AA sequence Show only first row Show all	>Lus10011578 pacid=23140430 polypeptide=Lus10011578 locus=Lus10011578.g ID=Lus10011578.BGIv1.0 annot-version=v1.0 MEVLQTEWMPELSSDMNNNSRPAKIPKTTNNSSRASPPSSSSSPYSCIISFDSSSSTDSVPAVPQKPPRSYPPAAVIKPEYSSIENGLQYGCSVLNNATT SHGTKRPAAAMSRSPISAQDHVMAERKRREKLSERFIALSAVVPGLKKTDKASVLGDAIKYLKQLQERAKTLEEQVKRKTIESVVYVKKSRVYNLDDDEL SSSTDENSDGFSSNQSLQLPEIEARVSGKDVMIRIHCEKQKGCLPKLLCEIEKLGLNVMNSNVLPFGSSTLDITVVAQMDHDFSTTTIDLVRNLRKALK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	0	1
AT2G22760	bHLH	bHLH019	basic helix-loop-helix (bHLH) ...		Lus10006085 [exp]	1.0	0.9782
AT4G28290			unknown protein		Lus10018592 [exp]	2.8	0.8441
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	5.7	0.8261
AT3G20340			unknown protein		Lus10021518 [exp]	7.4	0.7972
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	9.6	0.8045
AT3G23160			Protein of unknown function (D...		Lus10022201 [exp]	10.6	0.7049
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10040664 [exp]	11.8	0.7497
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	12.0	0.7843
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	16.7	0.7811
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013582 [exp]	18.2	0.7295

Compare expression of checked genes

Lus10011578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.