Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49650 922 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18550 268 / 6e-78 ATP binding microtubule motor family protein (.1) AT5G47820 229 / 2e-62 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G21380 227 / 7e-62 Kinesin motor family protein (.1) AT1G59540 222 / 4e-61 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G39050 220 / 1e-59 Kinesin motor family protein (.1) AT1G21730 217 / 4e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16630 216 / 4e-59 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G51150 216 / 3e-58 ATP binding microtubule motor family protein (.1.2) AT3G16060 211 / 6e-58 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019245 [exp] 1179 / 0 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005181 [exp] 227 / 4e-62 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10041958 [exp] 221 / 5e-60 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 220 / 2e-59 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10000392 [exp] 220 / 3e-59 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015448 [exp] 208 / 2e-58 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10024429 [exp] 217 / 4e-58 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018661 [exp] 214 / 4e-58 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 214 / 1e-57 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058400 [exp] 271 / 1e-78 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G122100 [exp] 226 / 2e-61 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.005G150800 [exp] 224 / 1e-60 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 222 / 3e-60 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G136600 [exp] 218 / 4e-59 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G106000 [exp] 219 / 5e-59 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G046700 [exp] 218 / 6e-59 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G027600 [exp] 216 / 1e-58 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.002G081300 [exp] 214 / 1e-57 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 214 / 2e-57 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0351 [flax] [poplar] CHCH PF08583 [flax] [poplar] Cmc1 Cytochrome c oxidase biogenesis protein Cmc1 like
Representative CDS sequence Show only first row Show all	>Lus10011579 pacid=23140383 polypeptide=Lus10011579 locus=Lus10011579.g ID=Lus10011579.BGIv1.0 annot-version=v1.0 ATGCCTAGCATCAGAGCTCCGGCGACGAAGAAAGCCACTACTCTTACTGTTGCTGTGAAGTGTAGGCCGTTAGCTAAGAGAGAGCGCGGCCGTGACATTG TTCGTTTCGGTGATAGAAATGAGATTACTGTTCTGGATCCTGACTTGTCCAAGGACTATCTCGATCGAGTACAGCATCGGACCAAGGAGAAGAGCTACTG CTTCGATCATGCCTTCGGTCCTGACTCGGCCAACTCGGAGGTTTACGCCACTTGTATATCATCAGTCATCTCTGGAGTTGTTCAAGGTCTAAATGCAACT GTGTTTGCCTATGGTTCAACTGGAAGTGGGAAGACTTATACTATGGTTGGGAACTCGGATGACCCTGGACTCATGGTTCTCAGCCTGAATACCATCTTTG ATCTTATGAAAATGAATAAGGGTCCAGATGAATTCGAAGTCACGTGTTCCTATCTCGAAGTGTACAATGAAGTTATCTATGATCTGCTTGAGAAATCATC AGGGCATCTAGAACTTCGAGAAGACCCGGAACAAGGCATAGTTGTTGCAGGGTTGAGATGCATCAAGGTTCACTCTGCTGATAAAATTCTTGAACTGTTG AATTTGGGGAATAGTAGAAGAAAAACAGAAAGCACAGAAGCTAATGCAACATCCTCAAGGTCACATGCTGTCTTAGAGATTATCGTTAAAAGAAGGCAGA AAAACAAGTTCAGAGATCAAATCTTGAAAGGGAAACTTGCACTTGTTGATCTTGCCGGTAGCGAGCGAGCTTCTGAAACAAATAATGTGGGTCACAAGCT AAGAGATGGTGGGAATATTAACCGTTCCCTCTTAGCTTTGGCAAATTGCATTAACGCCTTGGGGAAACAACAGAAGAAAGGCCTTGCTTATGTCCCTTAC CGTAACAGCAAACTTACTCGGATTCTTAAAGATGGCCTGAGCGGTAATTCACGAACAGTCATGGTTGCTACGATATCTCCAGCTGACAGTCAGTATCACC ATACCGTCAACACCTTGAAATATGCGGACAGAGCGAAGGAAATAAAGACGCATATTCAGAAAAACATTGGCACAGTGGATAATCACGTATCAGATTATCA AAAGATGATTGACAGTCTTCAGGTTGAGGTGGGCCGGTTGAGAAAAGCACTGGCGGAAAAGGAAACGCAGCTAACAGCCAAACCGACAGGAAAAGTTGAA GATGATGAGCTGTCGTGGTTAGATAGTTTGAGCCGTGAAACCAGTGAAAATGTTCAGGAGCGGATAAACTTACAGAAGGCTTTGTTTGAGCTCGAAGAAA CAAACCATCGTAATCGCGTTGAACTCCAGGAGCTCGACGAGGCGATTGCAAAGCAACAGACTGTCGAAAAGGAAGGAACAGCAGTGGATGCTTTGAGGTC TCGACGACTAATAATTCTCGATAATATCCGCGACAATGAGGAAGCTGGTGTCAACTACCAAAAGGATGTTGAAGCTAATGAGAAACGCCGGTGCCAACTC CAAGACATGATCGAGGAGGCCATCAGTGACCACGGCAACAAAACCTACTTGCGCATACTTAACCAATACAGACTTCTGGAAATGGGCAATACCGAGCTTC AGTTCGAACTCGCAATGAGAGACCAAATCATCCACAACCAACGAGAAGCTCACCGGAGCCTCTGGAACTTGCTAATGGGATTAGGCCTCGACGAGAAACG AATGCTGGACCTTGCCGCCAACCAAGGAATAACCATCGAAGACTGGACGTCCCAAATCGAGCTTCCGGAAAAGAAAGAGTTACCTAACTTGACGCACGCT CCTCCTTCCGGTGGACAACTACCATTCAGCCCTTGCACCTTACCCCCTCCGCGAGTGATGTGCTACGGAGGCCATCCTTCTTATTACCTGCAACCGCCAC CCCCTGCAGCTTTCCTCAGGCAAGCTTGTTGCCGACCGTCGTATCCCGAGCTGAGAGCGTGGCCTTCACCTTGCGACGGAAGATTGACACCTGGCAGCGT TTTCATCGGCCAACAACAACATAAGGACACCTGGCATAATAACGCCACGGCAGATAGACAGGTGTACGAAGGTGGGACTCCTCCCAACTTGCCTTCCTAT TGGAATGGGCCAAGATTGATTGGAGTGACGCAATTTGGGGCAGGAGGCCCACCGTATCCTGGCCCCTGTCTGATTTGGATTCCTGGTCTCGAAAGCCAAT TCGAGGGTTCTAATCCGAGCTTTCTTCTTCTTCTCAGTTCAATCGATTACTTGCTTACTTCTCGACTTTCCTTAGTTACCATGACAATGTTGATTATGAT GATGATGATGAATTTAGAACTGAAACGTTGGATTCGAGTGCTAGCACCTTATTTCATATTCAATATTATAGAGGAGTTCCAGAAGTGTCACATAGACCAT CCTTTAGGAAAGTTCTTTGGTGAATGTACAGAACTCAAGGTAAAGCTAGACCGTTGTTTCCGCCAGGAAAAATCTGTGAAGAGGAAGGCGAATTTCGAAG AGAGCAAGAAACTGAAAGAAAGGCTGCAAGCTATGCGGAAAGAAGCTGCTGCTGCTGAAAGGGGCGTGCAAGCTTAA
AA sequence Show only first row Show all	>Lus10011579 pacid=23140383 polypeptide=Lus10011579 locus=Lus10011579.g ID=Lus10011579.BGIv1.0 annot-version=v1.0 MPSIRAPATKKATTLTVAVKCRPLAKRERGRDIVRFGDRNEITVLDPDLSKDYLDRVQHRTKEKSYCFDHAFGPDSANSEVYATCISSVISGVVQGLNAT VFAYGSTGSGKTYTMVGNSDDPGLMVLSLNTIFDLMKMNKGPDEFEVTCSYLEVYNEVIYDLLEKSSGHLELREDPEQGIVVAGLRCIKVHSADKILELL NLGNSRRKTESTEANATSSRSHAVLEIIVKRRQKNKFRDQILKGKLALVDLAGSERASETNNVGHKLRDGGNINRSLLALANCINALGKQQKKGLAYVPY RNSKLTRILKDGLSGNSRTVMVATISPADSQYHHTVNTLKYADRAKEIKTHIQKNIGTVDNHVSDYQKMIDSLQVEVGRLRKALAEKETQLTAKPTGKVE DDELSWLDSLSRETSENVQERINLQKALFELEETNHRNRVELQELDEAIAKQQTVEKEGTAVDALRSRRLIILDNIRDNEEAGVNYQKDVEANEKRRCQL QDMIEEAISDHGNKTYLRILNQYRLLEMGNTELQFELAMRDQIIHNQREAHRSLWNLLMGLGLDEKRMLDLAANQGITIEDWTSQIELPEKKELPNLTHA PPSGGQLPFSPCTLPPPRVMCYGGHPSYYLQPPPPAAFLRQACCRPSYPELRAWPSPCDGRLTPGSVFIGQQQHKDTWHNNATADRQVYEGGTPPNLPSY WNGPRLIGVTQFGAGGPPYPGPCLIWIPGLESQFEGSNPSFLLLLSSIDYLLTSRLSLVTMTMLIMMMMMNLELKRWIRVLAPYFIFNIIEEFQKCHIDH PLGKFFGECTELKVKLDRCFRQEKSVKRKANFEESKKLKERLQAMRKEAAAAERGVQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49650			P-loop containing nucleoside t...		Lus10011579 [exp]	0	1
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	12.6	0.7220
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10021145 [exp]	17.3	0.7621
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039639 [exp]	17.8	0.7157
AT5G67390			unknown protein		Lus10011531 [exp]	26.3	0.7006
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	29.6	0.7110
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	42.3	0.6980
AT5G49350			Glycine-rich protein family (....		Lus10041125 [exp]	49.9	0.6765
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	51.6	0.6142
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	62.2	0.6418
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	116.5	0.5941

Compare expression of checked genes

Lus10011579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.