Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64500 572 / 0 Major facilitator superfamily protein (.1) AT2G22730 566 / 0 Major facilitator superfamily protein (.1) AT5G65687 515 / 1e-172 Major facilitator superfamily protein (.1) AT4G16890 108 / 2e-23 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46260 98 / 2e-20 disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44630 98 / 2e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G40060 97 / 5e-20 Disease resistance protein (NBS-LRR class) family (.1) AT1G69550 96 / 1e-19 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46470 94 / 3e-19 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 94 / 4e-19 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019244 [exp] 860 / 0 AT2G22730 638 / 0.0 Major facilitator superfamily protein (.1) Lus10009107 [exp] 468 / 1e-146 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 464 / 3e-144 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003528 [exp] 422 / 5e-137 AT2G22730 495 / 8e-173 Major facilitator superfamily protein (.1) Lus10018021 [exp] 365 / 8e-108 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024150 [exp] 317 / 2e-94 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001537 [exp] 315 / 2e-94 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10010223 [exp] 305 / 8e-88 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 304 / 3e-86 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081100 [exp] 610 / 0 AT5G64500 617 / 0.0 Major facilitator superfamily protein (.1) Potri.001G286600 [exp] 586 / 0 AT5G64500 548 / 0.0 Major facilitator superfamily protein (.1) Potri.019G068300 [exp] 177 / 6e-45 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 144 / 9e-35 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 143 / 2e-34 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 137 / 1e-32 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 135 / 8e-32 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 134 / 2e-31 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 132 / 5e-31 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 131 / 1e-30 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10011580 pacid=23140414 polypeptide=Lus10011580 locus=Lus10011580.g ID=Lus10011580.BGIv1.0 annot-version=v1.0 ATGGCCGGCGCCGACGACATCGTCGATTCATCTCCTGACGCAGCTCCGTCGTGGTTCACTCCCAAGAGGTATCTGTCTAAGCTCGCTTTCTACTGGAGTC ACGGTAATGATGGTGAACTGGAGGAGATGACGAGTTTACAATTGATTGTTTTCGATCGGTTTCGTAGGTTACTTGTGATCTTCTGTATGATTAACATGCT CAATTACTTGGACCGGGGAGCGATCGCCAGCAACGGCGTCAACGGAAGTCTCGAGAGTTGTGATGACTCGGGGATTTGCAGTTCCGCCACCGGAATTCAG GGGGATTTTAAGCTGAACAACTTCCAGGATGGAGTTCTTTCGTCGGCATTCATGGTTGGGCTTCTTCTGGCGTCTCCTATTTTTGCTTCCCTGGCTAAGA GTGTCAATCCTTTTAGACTTATCGGGGTTGGATTGTCTGTTTGGACATTGGCAACGGCTGGGTGTGGATTTTCGTTTGATTTTTGGTCGATTGCAATATG CCGTATGTTTGTTGGTGTTGGTGAGGCTTCTTTTATAAGTCTGGCAGCACCGTTCATAGATGATAATGCTCCAGTTTCTGAGAAAACGGCCTGGCTTGCA ATGTTCTACATGTGCATACCAACTGGAATTGCTTTTGGTTACGTCTATGGTGGAGTTGTTGGAACTTATATGAATTGGCGCTTTGCGTTCTGGCTTGAGT CACTTTTGATGCTTCCATTTGCTGTTTTTGGATTTCTCATGAAGCCTTTGCCGCTAAAAGGTTTTGGTACTGCTGAGTGCAAAACCCGTTCGCCTCTTTC TCTGGCTGAAAGTCTTTCTTCCACGGTTGAAGCTGAGCAATCAAGTACTACTGACACTTTTGCTGCAGGTTCCAAGAAAAACCGCAAGTCTTATATGATG ATCCAGTTGTCTCATCTTTCGAAGGACTTGAAAGTGCTTTTGCTAGAGAAAGTGTATGTTGTAAATGTTTTAGGTTACGTAGCGTACAATGCGGTGATTG GAGCATACTCATATTGGGGACCAAAAGCTGGCTATAATATTTATAATATGAACAATGCAGACCTTGTGTTTGGAGGAATGACAGTCGTCTGTGGAATTTT CGGAACGTTAGCTGGAGGATTCGTACTTGACCATATGACTGCTACAATTCCAAATGCTTTTAAGCTCCTTTCTGGAGCAACATTTCTGGGTGCAGTCTTT TGCTTCGCTGCATTCTGTATGAAAAGCTTGTCTGGTTTCATACCTGTGTTTGTAGTCGGTGAGCTACTGATTTTTGCAACTCAGGCTCCAGTAAATTATG TGTGTCTCCATTGTGTGGAACCTAGTCTGAGACCAATATCAATGGCTGTATCAACTGTCTCGATCCATATCCTCGGTGATGTTCCTTCCTCCCCGCTCGT CGGTGTCCTCCAGGACTCCATCAACAACTGGAGAGTAACCGCGCTTATTCTAACTGCTGTTCTGTTTCCTGCTGCTGCAATTTGGTCTATAGGTGTGTTC CTGAAAAGCGTGGACAAGTTCGAGACAAATGAAGCCTCTACAGGTTCCAACTCGGCCTCAGCGCCCTTGCTCGAAGAAGAAATGAGGAATGACGTCCCAA ACAATTTGCTCCCGTCTCAGGTTGAAAATTCGCCCGTCTGTCAGATAGATTACCACTTTGAGAGCAGGCTGAAAAGTTTCAGATACTACGTTACAAGAAG GCATGAAAAATTTGAATGGCTAAGAGCGATCCCAAATTTGTCGCGTTGCGAGAAACTCGAGGTCCTCTATCTCAAGGGATGCAAAAGACTAGTTGAGCTA CCGTCACACGTTCAATATTTGAACAAGCTAGTAGCCATCGACCTCAGCGATTGTCCAAATTTGATCCATCTTCCTACCAGACTCAACTCAAAATGCCTCG AGTACGTTTACTTGTCACGATGTCCCAAACTCACTCATTGTCCGGAGATCAATTCAGAACTCGGTCTACATGTATTGGATTTAGAGGAGACTCCAGTGAT AGAGCTACCAAGTGCAATACACAATGTTAAAAAAGGTGGCACCCTATCTCTTTGTGGCAAACACATAACCAGCTTCCCTCAAATTTCGAAAAGCTTGAAA CTGTTTCGACTCTGCCATACAACGATCACAAACATGGAAGTTCAAGATGAAGAATTGTTCGTGCCGCGGTTTGGTGAACTGGAGCTGGTGGAAAACTCAA AACTCGCGACCGTGCCAAACAACATTTGGGATACGGTTAAACACGAACTTCGGGTTAATGATAGCCCGTTGATCGAAAGTTTGCCTGATATCTCGAATCC TGTTAAGGACTTAACAGTGGTTTCTATAGAAAATTGCCGGAATCTGAAGAGATTTCCCTCTGCCATCAACCATCTGAAATCTGTGCATACTATCTGTTTT TCCGGGACCGGTATAAAATCGCTGCCTTGCACTATCCACTGGTTGGAAAAGCTCTGTTATTTGGTTTTGGATTATTGCGAAGGTTTGGAGTCTATCCCGG AGAATATTCATCAACTTGCCAAGCTAGAGTTGTTGGCTTTGAGGGGTTGTGCCAAGATTCAAGCTTTGCCTCAACTTCTTCCACCAGAGCTTAAGTATTT ATATTTAGGTGGATGCAAGTCATTACAAGCTCTACCAAGCAATATTGGGATGTTCAAATGGTGGGTAATGCACTTTGAAAATTGCTTGCGACTGGACTAT AAATTGGCGGATCAGATCGCTGCAGATTTCCACAGTCGTGCGATGACGTGTCCTGGAGCTGAGGGTACCGTTTTATACTCGGGGAGTGAGCTTCCAGGCT GGTGCCACAGCAACGGCAGCGACATCAATTGGGAAGTGGAGTTGCCTCCTGTTTCAGACAACCTTAAACTGGTTAAAGGAATTGCATTCGGCGTTGTTTT CTCTTCGGTGGCTACAACATTCGGCCTGAAGATGGAATTGTATGTCTCGGCTGCGCGCACCAGCACCATTGCTACTTTCTCGAGTAGACATCGGATCCAC GGAGAAAGTGGCGCCACATCTTCGTCTGATTATGTGTTTTTGAAATTTGTCAACAATTTCTTGGGCGTCAATGAATTGGCTGATCATGTGCCTATGTATA TGAAACATTATAGGGGGACTCTGTCGTTCCGAGCTTACGCTGAGCCAGATGAAGGTGGAGATGTCAAGGAAGTAGAGATGATCAAGTTCAAAAGGCTAGG CGTCTCGCCATTGTACTGA
AA sequence Show only first row Show all	>Lus10011580 pacid=23140414 polypeptide=Lus10011580 locus=Lus10011580.g ID=Lus10011580.BGIv1.0 annot-version=v1.0 MAGADDIVDSSPDAAPSWFTPKRYLSKLAFYWSHGNDGELEEMTSLQLIVFDRFRRLLVIFCMINMLNYLDRGAIASNGVNGSLESCDDSGICSSATGIQ GDFKLNNFQDGVLSSAFMVGLLLASPIFASLAKSVNPFRLIGVGLSVWTLATAGCGFSFDFWSIAICRMFVGVGEASFISLAAPFIDDNAPVSEKTAWLA MFYMCIPTGIAFGYVYGGVVGTYMNWRFAFWLESLLMLPFAVFGFLMKPLPLKGFGTAECKTRSPLSLAESLSSTVEAEQSSTTDTFAAGSKKNRKSYMM IQLSHLSKDLKVLLLEKVYVVNVLGYVAYNAVIGAYSYWGPKAGYNIYNMNNADLVFGGMTVVCGIFGTLAGGFVLDHMTATIPNAFKLLSGATFLGAVF CFAAFCMKSLSGFIPVFVVGELLIFATQAPVNYVCLHCVEPSLRPISMAVSTVSIHILGDVPSSPLVGVLQDSINNWRVTALILTAVLFPAAAIWSIGVF LKSVDKFETNEASTGSNSASAPLLEEEMRNDVPNNLLPSQVENSPVCQIDYHFESRLKSFRYYVTRRHEKFEWLRAIPNLSRCEKLEVLYLKGCKRLVEL PSHVQYLNKLVAIDLSDCPNLIHLPTRLNSKCLEYVYLSRCPKLTHCPEINSELGLHVLDLEETPVIELPSAIHNVKKGGTLSLCGKHITSFPQISKSLK LFRLCHTTITNMEVQDEELFVPRFGELELVENSKLATVPNNIWDTVKHELRVNDSPLIESLPDISNPVKDLTVVSIENCRNLKRFPSAINHLKSVHTICF SGTGIKSLPCTIHWLEKLCYLVLDYCEGLESIPENIHQLAKLELLALRGCAKIQALPQLLPPELKYLYLGGCKSLQALPSNIGMFKWWVMHFENCLRLDY KLADQIAADFHSRAMTCPGAEGTVLYSGSELPGWCHSNGSDINWEVELPPVSDNLKLVKGIAFGVVFSSVATTFGLKMELYVSAARTSTIATFSSRHRIH GESGATSSSDYVFLKFVNNFLGVNELADHVPMYMKHYRGTLSFRAYAEPDEGGDVKEVEMIKFKRLGVSPLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	0	1
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	1.0	0.8899
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	1.4	0.8847
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	4.9	0.8298
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043264 [exp]	5.0	0.7468
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10024668 [exp]	5.3	0.7791
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	13.0	0.7595
AT4G27020			unknown protein		Lus10032644 [exp]	13.3	0.7659
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Lus10037350 [exp]	13.6	0.7239
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	17.3	0.7578
AT2G46520			cellular apoptosis susceptibil...		Lus10026635 [exp]	17.9	0.7586

Compare expression of checked genes

Lus10011580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.