Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22720 99 / 6e-22 SPT2 chromatin protein (.1.2.3) AT4G37860 57 / 1e-08 SPT2 chromatin protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019243 [exp] 657 / 0 AT2G22720 140 / 1e-35 SPT2 chromatin protein (.1.2.3) Lus10021143 [exp] 57 / 4e-09 AT4G37860 66 / 7e-13 SPT2 chromatin protein (.1) Lus10007985 [exp] 42 / 5e-05 AT4G37860 56 / 1e-10 SPT2 chromatin protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009700 [exp] 188 / 8e-54 AT2G22720 166 / 2e-45 SPT2 chromatin protein (.1.2.3) Potri.005G148700 [exp] 183 / 4e-52 AT2G22720 177 / 1e-49 SPT2 chromatin protein (.1.2.3) Potri.001G257300 [exp] 67 / 1e-11 AT4G37860 108 / 1e-26 SPT2 chromatin protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08243 [flax] [poplar] SPT2 SPT2 chromatin protein
Representative CDS sequence Show only first row Show all	>Lus10011581 pacid=23140372 polypeptide=Lus10011581 locus=Lus10011581.g ID=Lus10011581.BGIv1.0 annot-version=v1.0 ATGCCGCAGTATTATGATGATGAAGTTGAAGAATATGATGACTATGAGGATGAAGGAGAGGAGGAGGAATACGAGGAAGAGGAGGAATACGAGGAAGTGG AAGAACGGAAGCCTACCGCTGAGGAATTAGAATATCTTAATTACAGAGAGCGGATGAAGGAACGTATTAGGAGGAAGATGCTGAAGGAGAACGGTTCATC TGCTGGCAGGTCTCTAGACAATAGGAAGAAACTTCCTCTTGAAAGATGCTTTGGTTCATTTTTTGGCCCCTCTCAGCCAGTCATTGCACAAAGAGTCATC CAGGAGAGTAAATCACTATTGGAAAATCCACACCTCTCAAGGAGAACTGAGAACCCGCAGCGTACTGAGAAACGGAGTTTGTCAACTGCATCAGCTCCAA AAAACGGAGTAACTGAGAGAGTGTTGACTGTGAAAAAGGAGTTACAAACAAAAGTGCAGACACTCAAGAATACAAGGGACTACTCGTTCCTCTTATCGGA TGATGCAGATGTCCCAGCTCCTGCCAAAGTGCCTCCGGCACGGAGAGTGTCTGTTCCACAGTCTGAGGCACGACCTGCTCAAGTGCAACAGAAGAGCAAA CAGCCTATGGCCACTGGTTACAACAGGCATGTTAATGGTGGTGCTCAAGAGCAGAGGAAATCAAATTCCATGAATGGTCAACCTCCCCTAAGGACAGTGG CCCCCCACAAGGGTCCTTCAAGTTCCGGTACTAAACCGAGTATGGACTCCAGGAGGCAGCCTGGTAGCAGCAATGGTGTTGGACCTGGACGGCCAGCAGT GCCGAAAGGTTTACTGCCAAAACCAGCTCTTGGGCACCACAGCGATAGGAGGGCACCTCTAGCCGCTCCAAAAACCCAGAGGCCTCTTCCCTCAAAGATG CCATCAAGTTCTCAGCGGCCACAGTTGGAAGAGAGGAAAATGATGCAAGAACCTAGTAGATATTCGGAGCAGAGAAAATTAGTACATGAACCCAATAGAC AGTCGGACCACAGGAGAATAGTACAAGATCCAAGTAGAAGTAGACCGATGGCAAAGCAACCAATTCCACCTCCGAGACCTCAGATAAATAAGCCTGTTCG ACCACCAAGCTCATCCCTTCCATTGAATAAGCCTGGTGTTCGAGCAGGCTCGTTGTACTCATCAGTACAAGAGAGTCGTACTATGAAAAGGCCCATATCG CGGAATTCTGATGATGGCTACAACGATCGTTACAGTAGGCCGCCTGTCCGGAGACCGGACTCCCGTCCAGCACCTCCTCGTGATGACCGACCTAAGAAAA GGCCATCAAGACCATTCCCTGAGGATGATGATGAGGGTGCACAGGCTATCAGTATGATCAGAAACATGTTCAATGTGAAGAGATATGCTGGGCGTGATGA TGATGACAGCGACATGGAAGCAAACTTTGATGATATCTTGAAGGAAGAAAGACGAAGTGCGATGATTGCGAGGAAGGAAGATGAGGAGCAACTGCGGCTG ATAGAGGAAGAAGAACGACAAGAACGAATGAGAAAGAAGCGTAAGCTGAACCGTTAG
AA sequence Show only first row Show all	>Lus10011581 pacid=23140372 polypeptide=Lus10011581 locus=Lus10011581.g ID=Lus10011581.BGIv1.0 annot-version=v1.0 MPQYYDDEVEEYDDYEDEGEEEEYEEEEEYEEVEERKPTAEELEYLNYRERMKERIRRKMLKENGSSAGRSLDNRKKLPLERCFGSFFGPSQPVIAQRVI QESKSLLENPHLSRRTENPQRTEKRSLSTASAPKNGVTERVLTVKKELQTKVQTLKNTRDYSFLLSDDADVPAPAKVPPARRVSVPQSEARPAQVQQKSK QPMATGYNRHVNGGAQEQRKSNSMNGQPPLRTVAPHKGPSSSGTKPSMDSRRQPGSSNGVGPGRPAVPKGLLPKPALGHHSDRRAPLAAPKTQRPLPSKM PSSSQRPQLEERKMMQEPSRYSEQRKLVHEPNRQSDHRRIVQDPSRSRPMAKQPIPPPRPQINKPVRPPSSSLPLNKPGVRAGSLYSSVQESRTMKRPIS RNSDDGYNDRYSRPPVRRPDSRPAPPRDDRPKKRPSRPFPEDDDEGAQAISMIRNMFNVKRYAGRDDDDSDMEANFDDILKEERRSAMIARKEDEEQLRL IEEEERQERMRKKRKLNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	0	1
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	1.0	0.8889
AT5G13950			unknown protein		Lus10031980 [exp]	2.2	0.8663
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	4.2	0.8792
AT5G22120			unknown protein		Lus10004788 [exp]	4.9	0.8093
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	5.7	0.8672
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	5.8	0.8187
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	8.1	0.8720
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10001106 [exp]	8.5	0.8364
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	8.8	0.8390
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	9.5	0.8177

Compare expression of checked genes

Lus10011581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.