Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65690 1006 / 0 PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 (.1) AT4G37870 1003 / 0 PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019242 [exp] 1114 / 0 AT4G37870 1120 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10042933 [exp] 560 / 0 AT4G37870 655 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10028227 [exp] 546 / 0 AT4G37870 614 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10042934 [exp] 367 / 8e-124 AT4G37870 409 / 8e-141 phosphoenolpyruvate carboxykinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011200 [exp] 1031 / 0 AT4G37870 1058 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Potri.002G107700 [exp] 989 / 0 AT4G37870 1039 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0374 [flax] [poplar] PEP-carboxyk PF01293 [flax] [poplar] PEPCK_ATP Phosphoenolpyruvate carboxykinase
Representative CDS sequence Show only first row Show all	>Lus10011582 pacid=23140370 polypeptide=Lus10011582 locus=Lus10011582.g ID=Lus10011582.BGIv1.0 annot-version=v1.0 ATGCCGACGAGCGGGAACGGGGCGACGGGAGTGGCGACGCCGAGGATGCAGGGGATGACGAAGATAACGACGACGAGCAGTAGCGGCGGGGAGCAGAAGG GATCAAGTGACGGAAAGTGGCGGGTGGCGCTGTCACGACATGGCGGCGCCGACGGTGAAGGCGCAGACGATCGACGAGCTCCACTCGCTTCAGCGGAAGA GGTCGGCTCCCAGCACTCCGATCAAAGGCGTTCAGGGATCGTTCGCCGCCGTCTCCGAGGAGGATCGCGAGAAGCAGCAGCTCAAGTCCATCAGGTAACG ATTTGCATTGGTTTTTTGAATTATAACGGGACGTTAAACCGCGCGTCGCTCGCATCACTGACCAGAGAGACTGGGCCGAAAGTGGTAAGAGGGGACCCAG CGACGAAGAAAGACGCCGCCGTCGGGAAGGTCCACCACCACCACCACGTCGACGCTCCGGCAATCAGCGCCAGCGACAGCTCACTTAAGTTCACTCACGT GCTCTACAACCTGTCCCCGGCGGAGCTTTACGAGCAGGCAATCAAGTACGAGAAAGGCTCGTACGTCACCTCGACCGGCGCCTTGGCCACTCTCTCCGGG GCCAAGACCGGCCGCGCTCCCAGGGATAAGCGAGTCGTTAAGGATGACGTCACCGAGGACGAGCTCTGGTGGGGCAAGGGATCGCCGAATATCGAGATGG ATGAGCATACTTTCTTGGTTAACAGAGAAAGAGCTGTTGATTACTTGAATTCTCTGGATAAGGTGTTTGTCAACGATCAATTCTTGAACTGGGATCCCGA GAACAGAATCAAGGTCCGGATCGTCTCGGCCAGAGCATACCATTCCTTGTTCATGCACAACATGTGCATCCGACCCACACCGGAAGAACTGGAGCAATTC GGCACACCGGACTTCACGATCTACAACGCCGGGCAGTTCCCCTGCAACCGTTACACGCACTACATGACGTCTTCCACCAGCGTGGATTTGAACTTGGCCA GGAGAGAAATGGTGATCCTCGGCACCCAATACGCCGGCGAGATGAAGAAGGGCTTGTTCAGCGTTATGCATTACCTCATGCCTAAGCGCTCGATCCTGTC CTTGCACTCTGGCTGCAACATGGGGAAACAAGGCGACGTCGCCCTCTTCTTTGGCCTCTCAGGTACAGGGAAGACAACATTGTCTACTGATCCCAACAGG TACCTGATCGGTGACGACGAGCATTGCTGGACCAACACCGGTGTCTCGAACATAGAAGGCGGGTGTTACGCCAAGTGCATCGATCTTTCGAAGGAGAAAG AGCCCGAAATCTGGAATGCCATCAAGTTCGGAACTGTGCTGGAGAATGTCGTGTTCGATGAGCATACCCGGGAGGTCGATTATATTGACAGATCAGTAAC AGAGAACACCAGAGCTTCGTACCCAATCGAGTACATTCCAAATGCGAAAATACCTGGCGTCGGTCCACACCCGAAGAACGTGATTCTTCTGGCGTGCGAC GCCTTTGGTGTGCTTCCACCAGTGAGCAAGTTGACCATGGCGCAGACCATGTACCATTTCATCAGCGGCTACACTGCCCTGGTCGCTGGAACAGAGGATG GAGTGAAGGAGCCACGAGCGACGTTTTCGGCCTGTTTTGGTGCAGCGTTCATAATGCTGCATCCGACCAAGTACGCAGCCATGTTGGCAGAGAGAATGCA GCAGCATGGCGCGACTGGATGGCTCGTTAACACCGGTTGGTCAGCAGGAAGCTACGGTTCAGGAAGCAGGATCAAGCTGGCTTACACGAGGAAGATCATC GACGCGATACACTCAGGCAGTTTGTTGAAATCGGAGTACAGGAAAACTGAAGTGTTCGGGCTCGAAATCCCCACTCATGTCGATGGGGTGCCCTCAGAAA TCCTGGAACCTATGAACACTTGGACAGACAAGAAGGCTTACAAGGAAACGCTAATGAAGTTGGCGGGTCTATTCAAGAGTAACTTCGAGACATTCACGGA TTACAAGATTGGGAAAGACAACAATCTCACTGAGGAGATCTTGGCCGCCGGTCCAAATTTCTGA
AA sequence Show only first row Show all	>Lus10011582 pacid=23140370 polypeptide=Lus10011582 locus=Lus10011582.g ID=Lus10011582.BGIv1.0 annot-version=v1.0 MPTSGNGATGVATPRMQGMTKITTTSSSGGEQKGSSDGKWRVALSRHGGADGEGADDRRAPLASAEEVGSQHSDQRRSGIVRRRLRGGSREAAAQVHQVT ICIGFLNYNGTLNRASLASLTRETGPKVVRGDPATKKDAAVGKVHHHHHVDAPAISASDSSLKFTHVLYNLSPAELYEQAIKYEKGSYVTSTGALATLSG AKTGRAPRDKRVVKDDVTEDELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTPEELEQF GTPDFTIYNAGQFPCNRYTHYMTSSTSVDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRSILSLHSGCNMGKQGDVALFFGLSGTGKTTLSTDPNR YLIGDDEHCWTNTGVSNIEGGCYAKCIDLSKEKEPEIWNAIKFGTVLENVVFDEHTREVDYIDRSVTENTRASYPIEYIPNAKIPGVGPHPKNVILLACD AFGVLPPVSKLTMAQTMYHFISGYTALVAGTEDGVKEPRATFSACFGAAFIMLHPTKYAAMLAERMQQHGATGWLVNTGWSAGSYGSGSRIKLAYTRKII DAIHSGSLLKSEYRKTEVFGLEIPTHVDGVPSEILEPMNTWTDKKAYKETLMKLAGLFKSNFETFTDYKIGKDNNLTEEILAAGPNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	0	1
					Lus10018908 [exp]	2.4	0.8552
					Lus10024103 [exp]	4.5	0.8546
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	6.3	0.8751
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	8.5	0.8076
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	8.9	0.8494
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10027584 [exp]	10.2	0.8379
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10025246 [exp]	10.5	0.8304
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	11.0	0.8900
					Lus10029087 [exp]	13.2	0.8382
AT4G15620			Uncharacterised protein family...		Lus10035168 [exp]	14.8	0.7959

Compare expression of checked genes

Lus10011582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.