Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37840 374 / 1e-125 HKL3 hexokinase-like 3 (.1) AT4G29130 309 / 2e-100 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 292 / 1e-93 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G47840 224 / 1e-67 HXK3 hexokinase 3 (.1) AT1G50460 217 / 9e-65 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 207 / 4e-61 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038287 [exp] 308 / 5e-100 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 303 / 1e-97 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10037588 [exp] 295 / 6e-95 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 284 / 2e-90 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10002041 [exp] 267 / 8e-84 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10024336 [exp] 266 / 2e-83 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10025815 [exp] 262 / 4e-81 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10005019 [exp] 224 / 3e-67 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 223 / 7e-67 AT1G50460 636 / 0.0 hexokinase-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009300 [exp] 430 / 1e-147 AT4G37840 520 / 0.0 hexokinase-like 3 (.1) Potri.001G190400 [exp] 313 / 8e-102 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 295 / 7e-95 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 271 / 7e-86 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.001G254800 [exp] 250 / 1e-77 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 224 / 1e-67 AT1G50460 576 / 0.0 hexokinase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10011584 pacid=23142756 polypeptide=Lus10011584 locus=Lus10011584.g ID=Lus10011584.BGIv1.0 annot-version=v1.0 ATGAGAAAGGAAACGGTGGTGATAATAGCAACGATAACGGCCGTCACCACTGCGGCAGCGCTTCTATGGCGAGAGAAGGTTACCAAGGAGCGGCGGTTAA AGCGAGCCAAGCGTATATTACATGATTTTGCTGCGGAATGTGTCACCCCTGTCCCCAAATTGCGGGAGGTGGCCAATGCTCTGCTCGCCGATATGGAATC CGCCACAAACCACCACATTAGTAACTTGATCGTGTCGTACGTTTCTCCCCTCCCAAATGGAGACAAGAAAGGGCGGCTCCGCTACGGTGTGAATTTAGGA GCCACAAAGTTCACGATTTGGTGCGGCAGACTTGGTGCCAGAGATGAAGAGATTTCTGATTTGAAAAGGGACGACATTTCCTTGCCTTCCAATGTCCTTC ATGCTACTGCTCAGGAGGTATTTGACTACATAGCAGCAGAGTTGGCAAAATTTATTGCTGCAAATCCCCACGAGGATGACATTGTCGACAACGACCATGC TGATAATGAGAGAAGACTGGGGTTTACGGTATCATATCATGAAGCTGCGGTGGCCACCTCATCATGCTCCGGCATTAGTCAGGTTGGCAACGGTTTGGTG AAGGAGTTGAACCAAACTCTGAAGAAACAAGGGCTTAGGATGCGAGTTTGTGCAATAGCAGATGAGAATGTGGGCAATTTGGCTGCTGGAAGGTACTATG ACAATCACACTGTCGCTGCTGTTACCCTTGGTATCCGCACCACTGCCACGTTTCTGATCCACCCTCCTCATGGATCTGATCATGAGCTGCAGGTCATAAG CGTGGAATGGAGCAAGTTCAAGTCATCCAGTCTTCCAATCACTGAGATTGACGCTAGCTTGGATGCGGAGAGCTGTAATCCAGGTAGCCAGGCATTGGAG AAGATGATGTCAGAGATGTACCTTGGGGAGATAGTGAGGAAAGTGTTGTTGAAGATGGCTAGGGAAGCTAAACTTTTCGGCAGGACCGTGCCTTGCAAAC TCTGCATTCCTTATGTTCTAAGATGCCCAGAAATGGCAGCGATGCATCAAGACACCTCAGAAGATCGTCAAGTGGTTGAAGAAAAGCTGAAGCAAGTTTT CGGAATAAAGCGTTCGAGTCAGAAGGCGAGGGTGTTGGTCGGGGAGGTGTGCGAGGTGGTTGTTGAGCGCGGGGCAAGGCTGGCCGGAGCGAGCATAGTG GGGATGGTAAAGAAGGTGGGAAGGAGGGAGCACAAGAGAAGTGTAGTGATGGTTGGAGGTGGACTGTATCACCATTACCGTCTCTTCAGAAACCATCTCC ACACCTCTATCTACGAGATGCTTGGCGATGAACATAACAGTATTCTTCTTCGTAATTCTCCTCTTGCTGGCCCTCTCTTTTTATGA
AA sequence Show only first row Show all	>Lus10011584 pacid=23142756 polypeptide=Lus10011584 locus=Lus10011584.g ID=Lus10011584.BGIv1.0 annot-version=v1.0 MRKETVVIIATITAVTTAAALLWREKVTKERRLKRAKRILHDFAAECVTPVPKLREVANALLADMESATNHHISNLIVSYVSPLPNGDKKGRLRYGVNLG ATKFTIWCGRLGARDEEISDLKRDDISLPSNVLHATAQEVFDYIAAELAKFIAANPHEDDIVDNDHADNERRLGFTVSYHEAAVATSSCSGISQVGNGLV KELNQTLKKQGLRMRVCAIADENVGNLAAGRYYDNHTVAAVTLGIRTTATFLIHPPHGSDHELQVISVEWSKFKSSSLPITEIDASLDAESCNPGSQALE KMMSEMYLGEIVRKVLLKMAREAKLFGRTVPCKLCIPYVLRCPEMAAMHQDTSEDRQVVEEKLKQVFGIKRSSQKARVLVGEVCEVVVERGARLAGASIV GMVKKVGRREHKRSVVMVGGGLYHHYRLFRNHLHTSIYEMLGDEHNSILLRNSPLAGPLFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	0	1
AT5G24130			unknown protein		Lus10001061 [exp]	1.0	0.9947
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	3.2	0.9279
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	3.9	0.9279
AT1G70780			unknown protein		Lus10039287 [exp]	4.5	0.9279
					Lus10027606 [exp]	5.0	0.9121
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	5.5	0.8998
AT5G12460			Protein of unknown function (D...		Lus10009957 [exp]	6.3	0.7260
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	6.9	0.8386
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	7.2	0.7117
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	7.9	0.7902

Compare expression of checked genes

Lus10011584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.