Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65700 1045 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 986 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 603 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 587 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G51350 419 / 6e-132 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 416 / 3e-129 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT2G25790 411 / 2e-128 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 399 / 1e-122 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 382 / 3e-117 HSL1 HAESA-like 1 (.1) AT1G08590 375 / 4e-114 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039641 [exp] 1310 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 1054 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 875 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 773 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 630 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 547 / 6e-180 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 539 / 9e-177 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 525 / 4e-171 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 511 / 8e-166 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009200 [exp] 1078 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 689 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 688 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 623 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 578 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 572 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 477 / 9e-153 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 421 / 1e-131 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 421 / 2e-131 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 417 / 6e-130 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011585 pacid=23142761 polypeptide=Lus10011585 locus=Lus10011585.g ID=Lus10011585.BGIv1.0 annot-version=v1.0 ATGAGGCCTCTATTCTTCCTCCTCTTGCTCCTCCATGTCGTGGCTTCCTCTGCTCGTATACTGTCAGAATCCGAAGCTCTCTTCTCACTCAAATCCGCCG TAACTGACGACCCACAATCATCCCTTGCCGCCTGGAACTCTTCCGTTCCTATCTGCACCTGGCCCGGTGTCACGTGCGACCGCTCCCGGCGTCACGTGAC ATCCATCGACCTCTCCGGCCTCAACCTATCCGGTACTCTGTCCCCGGACGTAGCCCACCTCCGCTACCTTCAGAACCTCTCTCTCGCCGTCAATCAGTTC TCCGGCCCAATCCCGCCGCAGCTCTCCGCTGTTTCCGGCCTCCGCCTCCTCAACCTTTCCAACAATATCTTCAATGGCACGTTCCCCAATCAGCTCTCTC AGCTAAAAAATTTCCAGGTTCTCGACCTCTACAACAACAACATGACCGGCGATTTGCCGCTTTCCGTCACTGAAATGCCCAATCTCCGCCACTTACACCT CGGCGGGAACTTCTTCGCCGGGAAAATCCCTACGGAGTATGGGCGGTGGGAGTCCCTGGAGTACTTAGCGGTCTCAGGTAACGAGCTGGTGGGGAGGATC CCGCCAGAGCTTGGTAACTTAACCAAGCTACAGGAGCTCTACATTGGTTACTACAACAGCTACGAAGGCGGCCTCCCCGCGGAGATCGGGAATCTGTCGG AATTGGTCAGATTCGACGCAGCTAATTGCGGGTTGTCCGGCGAGATACCCACCGAGATTGGGAAGCTGCAGAAACTGGACACATTGTTCCTTCAAGTGAA CGCTCTCTCCGGGCCGCTGACGCCAGAGCTCGCTAATCTCAACAGCTTGAAGTCCATGGATTTGTCCAACAACATTTTCCAAGGAGAGATTCCTCCCTCT TTCGCCCAGCTCAAGAACTTGACTCTCCTCAATCTCTTCAGGAACAAGCTCCACGGCGCCATTCCGGAGTTCATCGGCGAGCTGCCGGAGCTGGAAGTGT TGCAGCTGTGGGAGAATAACTTCACCGGAAGCATCCCTCAAGGTTTGGGCAGGAACGGGAGGCTCAAGATTCTGGATCTCTCTTCTAACAAGCTCACCGG GACTCTACCTCCGGATCTCTGTTCCGGTAATCGTTTAGAAACCCTGATTACCCTTAGCAACTTCCTCTTTGGGCCCATCCCGGAATCATTGGGGAAATGC GAGTCGCTGAGTCGAATTCGAATGGGGGAAAATTTCTTAAACGGTTCCATTCCAAGCGGTCTTTTGGGGTTGCCAGAGCTTACCCAAGTTGAGCTTCAAG ACAATCTATTGACGGGAGAGTTCCCAGTTACTAGTGATGCAGTGGCGTTGAATCTTGGCCAAATTAGTCTATCAAACAACCAGCTCTCGGGGATTTTGCC TCCCACCATCGGCAACTTCTCCGGAGTTCAGAAGTTGCTTCTCGACGGGAACCAATTCACTGGTTCAATCCCATCCGAGGTCGGAAAATTACAGCAGCTT TCGAAGATGGACATCAGCCATAACAAGTTGTCAGGTCTAATTACACCTGCAATCAGCCAATGTAAGCTGCTGACGTTTGTCGATCTGAGTCGAAACGAAC TGTCCGGTGTGATTCCGACTGAGATCACAGGGATGAGGATCTTGAACTACCTGAATGTGTCGAGAAACAATCTTATTGGTACAATCCCCCCATCCATTTC CACTATGCAGAGCTTAACCTCAGTTGATTTCTCTTACAACAATCTCACTGGTTTAGTTCCTGGAACGGGCCAATTTAGCTACTTCAACTACACTTCATTT TTGGGTAATCCTGATCTATGCGGTCCTTATCTGGGTCCTTGTAAAGATGGGGTTGCAAATGGAACCCACCAGCCACATGCTAAAGGACCACTGTCTGCCT CTGTGAAGCTCTTGCTTGTTATTGGCTTGCTTGTATGCTCCATTGCCTTTGCAGTTGCGGCTATCATCAAAGCAAGGTCACTGAAAAAGGCTAGTGACTC TCGTGCCTGGAAGCTCACTGCATTCCAACGCCTAGACTTGAATGGAAGTTTAGGTGAAGTTATTCATGGAAAGAAAGGTGGCCATCTGCATTGGACTACC AGATACCGAATAGCTGTTGAGGCTGCTAAAGGGCTTTGCTATCTTCACCACGATTGTTCCCCTTTGATTGTTCATCGTGATGTCAAATCAAACAACATCC TTTTGGATTCCAGTTTTGAAGCTCACGTTGCTGATTTTGGGCTTGCGAAGTTCTTGCAAGATTCTGGAACATCTGAGTGCATGTCTGCAATTGCTGGATC TTATGGCTACATAGCTCCAGAGTATGCCTACACGTTGAAGGTGGATGAGAAGAGCGATGTGTATAGCTTCGGAGTAGTCCTGTTGGAGCTAATCACAGGA AGGAAACCGGTGGGGGAGTTTGGTGACGGTGTGGATATAGTCCAATGGGTACGAAACCTGACCGATTCAAACAAGGAAGGTGTGTTGAAAGTGTTGGACC CACGGCTGTCAACGGTTCCTCTCCATGAGGTAATGCACATGTTCTACGTGTCAATGCTATGTGTGGAGGAACAAGCCGTGGAGCGTCCCACAATGAGGGA GGTCGTGCAGATCCTAACGGAGCTCCCCAAGCCACCAGGCTCGAAACTACAAGCTACCGATTCGACAACAGTCACAGACTCACCACAGTCAACAACAGCT TCAACAAGTATGGACTCTCCTCCAACTGCAGGAAGAGCAGCAGCTACTAGTAGTAAAGAAAGTAGAGAGCAGCAGCAGCCTCAGTCTCCACCTGATCTTC TCAGCATTTGA
AA sequence Show only first row Show all	>Lus10011585 pacid=23142761 polypeptide=Lus10011585 locus=Lus10011585.g ID=Lus10011585.BGIv1.0 annot-version=v1.0 MRPLFFLLLLLHVVASSARILSESEALFSLKSAVTDDPQSSLAAWNSSVPICTWPGVTCDRSRRHVTSIDLSGLNLSGTLSPDVAHLRYLQNLSLAVNQF SGPIPPQLSAVSGLRLLNLSNNIFNGTFPNQLSQLKNFQVLDLYNNNMTGDLPLSVTEMPNLRHLHLGGNFFAGKIPTEYGRWESLEYLAVSGNELVGRI PPELGNLTKLQELYIGYYNSYEGGLPAEIGNLSELVRFDAANCGLSGEIPTEIGKLQKLDTLFLQVNALSGPLTPELANLNSLKSMDLSNNIFQGEIPPS FAQLKNLTLLNLFRNKLHGAIPEFIGELPELEVLQLWENNFTGSIPQGLGRNGRLKILDLSSNKLTGTLPPDLCSGNRLETLITLSNFLFGPIPESLGKC ESLSRIRMGENFLNGSIPSGLLGLPELTQVELQDNLLTGEFPVTSDAVALNLGQISLSNNQLSGILPPTIGNFSGVQKLLLDGNQFTGSIPSEVGKLQQL SKMDISHNKLSGLITPAISQCKLLTFVDLSRNELSGVIPTEITGMRILNYLNVSRNNLIGTIPPSISTMQSLTSVDFSYNNLTGLVPGTGQFSYFNYTSF LGNPDLCGPYLGPCKDGVANGTHQPHAKGPLSASVKLLLVIGLLVCSIAFAVAAIIKARSLKKASDSRAWKLTAFQRLDLNGSLGEVIHGKKGGHLHWTT RYRIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITG RKPVGEFGDGVDIVQWVRNLTDSNKEGVLKVLDPRLSTVPLHEVMHMFYVSMLCVEEQAVERPTMREVVQILTELPKPPGSKLQATDSTTVTDSPQSTTA STSMDSPPTAGRAAATSSKESREQQQPQSPPDLLSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	1.0	0.9419
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	2.4	0.9370
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	3.5	0.9147
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	5.3	0.8912
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	6.0	0.9145
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	7.3	0.8928
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	7.4	0.9009
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	10.2	0.8878
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	10.4	0.8778
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	12.0	0.8772

Compare expression of checked genes

Lus10011585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.