Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22780 545 / 0 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 496 / 3e-175 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G15020 397 / 7e-136 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT1G53240 391 / 1e-133 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G47520 365 / 1e-122 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT3G53910 61 / 2e-11 malate dehydrogenase-related (.1) AT4G17260 65 / 3e-11 Lactate/malate dehydrogenase family protein (.1) AT5G43330 55 / 4e-08 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT1G04410 52 / 4e-07 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039642 [exp] 597 / 0 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 485 / 3e-170 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10017939 [exp] 407 / 6e-140 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 405 / 4e-139 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10020501 [exp] 383 / 5e-131 AT5G09660 482 / 2e-172 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) Lus10034458 [exp] 374 / 6e-126 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 372 / 3e-125 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 364 / 4e-122 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 363 / 1e-121 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009100 [exp] 553 / 0 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.009G081600 [exp] 531 / 0 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 522 / 0 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.011G096300 [exp] 409 / 1e-140 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 396 / 2e-135 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.001G376500 [exp] 390 / 2e-133 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.017G102000 [exp] 382 / 2e-129 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 377 / 2e-127 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 376 / 1e-126 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 217 / 5e-67 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011587 pacid=23142758 polypeptide=Lus10011587 locus=Lus10011587.g ID=Lus10011587.BGIv1.0 annot-version=v1.0 ATGCAGAACGCTCCCACTTCTTCTGAACCCATTCAACGCATTGCCAGGATCGCTGCCCACGTCAACCCTCCCAATTTCCTGATGGAGGAACGTTCGGGAC TCAGCCCGTGGAATTGCAGAGCGAAAGGCGGCTCTCCAGGATTCAAGGTGGCGATACTGGGAGCTGCAGGTGGAATAGGCCAGCCACTGGCGATGTTGAT GAAGATGAATCCCTTGGTATCGGTGCTTCATTTGCATGATGTGGTTAATACTCCTGGCGTCACTGCTGATATCAGTCACATGGATACTGGTGCTGTGGTA CGGGGCTTCTTGGGACAACAGCAATTGGAAGATGCCGTTACGGGAGTGGATCTTGTGATCATACCTGCCGGTGTTCCTAGAAAACCAGGAATGACTAGGG ATGACCTGTTCAACATCAACGCTGGAATTGTCAAGACACTTTCCCAAGCAGTTGCTAAGTGCTCTCCAAAAGCCATTGTCAACATAATTAGCAATCCAGT TAACTCTACTGTACCAATTGCTGCTGAAGTTTTCAAGAAAGCTGGAACTTTTGATCCTAGGCGGGTTTTGGGAGTCACAATGCTTGATGTTGTTAGAGCT AACACCTTTGTGGTAGCTGTGCGTGCGAGCCGGGTGTCAGCTGGTGTAATGGCCCAGCCACTGGCGATGTTGATGAAGATGAATCCCTTGGTATCGGTGC TTCATTTGCATGATGTGGTTAATACTCCTGGCGTCACTGCTGATATCAGTCACATGGATACTGGTGCTGTGGTACGGGGCTTCTTGGGACAACAGCAATT GGAAGATGCCGTTACGGGAGTGGATCTTGTGATCATACCTGCCGGTGTTCCTAGAAAACCAGGAATGACTAGGGATGACCTGTTCAACATCAACGCTGGA ATTGTCAAGACACTTTCCCAAGCAGTTGCTAAGTGCTCTCCAAAAGCCATTGTCAACATAATTAGCAATCCAGTTAACTCTACTGTACCAATTGCTGCTG AAGTTTTCAAGAAAGCTGGAACTTTTGATCCTAGGCGGGTTTTGGGAGTCACAATGCTTGATGTTGTTAGAGCTAACACCTTTGTGGCAGAGGTTTTAGG TCTTGATCCTAGGGAAGTCGAATGTCCAGTTGTTGGCGGCCATGCTGGAGTCACTATTTTACCTCTTCTATCACAGGTTAAACCTCCATGCTATTTCACA CAGAAAGAAATTGACTACTTGACCGATCGCATTCAGAATGGTGGGACTGAAGTTGTTGAGGCAAAAGCTGGCACCGGTTCTGCGACACTGTCAATGGCCT ATGCAGCCGTTAAGTTTGCAGACGCCTGCCTCAGGGGCTTAAGAGGAGATGCTGGAGTTGTAGAGTGCGCATATATAGCCTCTCAAGTGACAGAGCTTCC GTTCTTCGCATCGAAAGTGAGACTCGGCCGTACTGGAGTGGAAGAGATTTACCCACTCGGTCCCCTTAACGAGTATGAAAGGACTGGCTTGGAGAAAGCA AAGAAAGAGCTAGCAGAAAGCATTCAAAAGGGAATTTCGTTTGCCAAGAAATGA
AA sequence Show only first row Show all	>Lus10011587 pacid=23142758 polypeptide=Lus10011587 locus=Lus10011587.g ID=Lus10011587.BGIv1.0 annot-version=v1.0 MQNAPTSSEPIQRIARIAAHVNPPNFLMEERSGLSPWNCRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLHDVVNTPGVTADISHMDTGAVV RGFLGQQQLEDAVTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLSQAVAKCSPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPRRVLGVTMLDVVRA NTFVVAVRASRVSAGVMAQPLAMLMKMNPLVSVLHLHDVVNTPGVTADISHMDTGAVVRGFLGQQQLEDAVTGVDLVIIPAGVPRKPGMTRDDLFNINAG IVKTLSQAVAKCSPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPRRVLGVTMLDVVRANTFVAEVLGLDPREVECPVVGGHAGVTILPLLSQVKPPCYFT QKEIDYLTDRIQNGGTEVVEAKAGTGSATLSMAYAAVKFADACLRGLRGDAGVVECAYIASQVTELPFFASKVRLGRTGVEEIYPLGPLNEYERTGLEKA KKELAESIQKGISFAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	0	1
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	1.0	0.9208
AT4G29960			unknown protein		Lus10001629 [exp]	6.9	0.8886
AT1G74780			Nodulin-like / Major Facilitat...		Lus10036663 [exp]	7.3	0.8330
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	7.5	0.8790
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10024508 [exp]	8.0	0.8755
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	16.4	0.8682
AT4G32250			Protein kinase superfamily pro...		Lus10019343 [exp]	17.0	0.8086
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	18.3	0.8654
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	18.6	0.8441
AT3G27310		PUX1	plant UBX domain-containing pr...		Lus10032080 [exp]	19.2	0.8209

Compare expression of checked genes

Lus10011587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.