Plant FIBer expression Database

Lus10011588 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012088
[exp]
141 / 2e-40 ND /
Lus10015951
[exp]
65 / 2e-12 ND /
Lus10025407
[exp]
63 / 3e-12 ND /
Lus10011070
[exp]
54 / 1e-09 ND /
Lus10033062
[exp]
0 / 1 ND /
Lus10015929
[exp]
0 / 1 ND /
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0219 RNase_H PF10551 MULE MULE transposase domain
Representative CDS sequence
>Lus10011588 pacid=23142771 polypeptide=Lus10011588 locus=Lus10011588.g ID=Lus10011588.BGIv1.0 annot-version=v1.0
ATGCATAGAAAGAAGACTCCTGCCATAGGCCTAGGGAAAGTTACTGGCACTGCGAAAAAGCCACGACCATCCCCTTCCACAGAGCCTTCGTCTGCTGGGA
CTAGTCCACCATCATCTCCACCACGGGCTTCTGTTTCCAGCCGTCCACAGCGGGGTGGAGCTTCATCTTCGGCTAACCCTCGCCAATCACGGTGGGCTTC
TCAGCAAGAGATGCCATCAGACCCTATTCCAGCTGCTGCTACTGCTCTACCGAGTCCAGAGGTGGAGCAGACTATCTTTGACTGTGAGCCAGGAAGTGAT
TTCGCCCGCCGATACGGAGTGTATCCGACTTGGGCGACTAACCTATACCGATCCAGCTGCTTCTCCGATCTGCAATTTTTTACTTCTCACCTTCAATCGT
CTCTCAGCTTCAATCAGTCACTTCCGATCATCCTCTGTCATTCTCGACTTCATCCCGATTCTCTCACTGTTCACCTCAAAGGGAAGTACTATGCTCTTTG
GGCATTTCAATTTTTTTTCCTCATTGTGGACAAAGAACTGCTCTCCTATCTCGATGGGAGTTCCAAACAGCATGCGGTTGATGCTACTACTACTGCTCAA
TGCACATGGGAATCACGTAACGCTCAAGTTTTCTCAGGGCTTCTTGGTTCAATGAAGGCTGAGACTTATGTTTGGATGTTGAATCAGTTGAGAATGCCGA
TGGGGCCGCGGCAACCAACTGCATTTGTGACTGAAAAGGAGCGTGGATTGGCGGTCGGATTGAACACTGTCATCCCTGAAATGCCACACTTACTTTGCGA
GGCCTTCATGCATGGGAACGAATAA
AA sequence
>Lus10011588 pacid=23142771 polypeptide=Lus10011588 locus=Lus10011588.g ID=Lus10011588.BGIv1.0 annot-version=v1.0
MHRKKTPAIGLGKVTGTAKKPRPSPSTEPSSAGTSPPSSPPRASVSSRPQRGGASSSANPRQSRWASQQEMPSDPIPAAATALPSPEVEQTIFDCEPGSD
FARRYGVYPTWATNLYRSSCFSDLQFFTSHLQSSLSFNQSLPIILCHSRLHPDSLTVHLKGKYYALWAFQFFFLIVDKELLSYLDGSSKQHAVDATTTAQ
CTWESRNAQVFSGLLGSMKAETYVWMLNQLRMPMGPRQPTAFVTEKERGLAVGLNTVIPEMPHLLCEAFMHGNE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011588
[exp]
0 1
AT5G20630 ATGER3, GLP3A, ... GERMIN-LIKE PROTEIN 3, ARABIDO... Lus10020851
[exp]
1.0 0.8919
AT5G42905 Polynucleotidyl transferase, r... Lus10005922
[exp]
1.4 0.8876
Lus10003223
[exp]
1.7 0.8436
AT4G12490 Bifunctional inhibitor/lipid-t... Lus10032256
[exp]
2.2 0.7926
AT1G27180 disease resistance protein (TI... Lus10040576
[exp]
12.4 0.7753
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Lus10043320
[exp]
14.7 0.6844
AT1G18310 glycosyl hydrolase family 81 p... Lus10038600
[exp]
16.4 0.7821
AT2G01690 ARM repeat superfamily protein... Lus10003679
[exp]
16.6 0.7984
AT1G11340 S-locus lectin protein kinase ... Lus10006745
[exp]
16.7 0.7747
AT5G12870 MYB ATMYB46 myb domain protein 46 (.1) Lus10027369
[exp]
26.2 0.7721

Lus10011588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.