Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22790 165 / 6e-48 unknown protein AT5G67020 159 / 8e-45 unknown protein AT3G50340 132 / 7e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011575 [exp] 357 / 7e-122 AT2G22790 160 / 8e-46 unknown protein Lus10019249 [exp] 226 / 8e-71 AT5G67020 141 / 2e-38 unknown protein Lus10019345 [exp] 116 / 4e-31 AT5G67020 248 / 2e-82 unknown protein Lus10009357 [exp] 91 / 8e-22 ND 167 / 2e-51
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008900 [exp] 322 / 2e-108 AT2G22790 153 / 2e-43 unknown protein Potri.007G044200 [exp] 162 / 6e-46 AT5G67020 537 / 0.0 unknown protein Potri.005G138300 [exp] 153 / 1e-42 AT5G67020 520 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011589 pacid=23142768 polypeptide=Lus10011589 locus=Lus10011589.g ID=Lus10011589.BGIv1.0 annot-version=v1.0 ATGCCTGCACCCACCGTCACCGCAATCCAGCCGTTAAGCCGCTATCGCCCTCCGAAACCCAAATCCTCCTCAATCGCCAAGCATCAAGTCTGTTTTTCCT TCGCCGCCTACGCAAAAAAGCTTATCGATCACCTCAAATCCCTCCACATCACCATCCTCCCCGGTCTCACTGATCCCGAGTTCTCTGGTTTGGAATCCCA ACTCAATTTCCAGTTCCCACCGGACCTGCGATCAATTCTTCGGGAGGGCCTCCCCTTCGGCCCCAATTTCCCCAACTGGAGATCCGCTTCTCTTCACCAA CTCCGCATCCTCCCTGCATTAAACCTCTCCAGGAACATCCGATTCAACCACTTCTGGGTCGACTCATGGGGCACCCGACCCGCTGACACCTCCCAATTGA AACGAACCGCTAAGCAATTGCTACATAGTGCCCCGCCTCTTGTCCCGATATACCGGAACTGCTACATCCCAGCCTCTCCCTCGGCTGCCGGAAACCCCGT CTTCTACGTTGATGACAAGGTTGTCCGCATCCTTAGCTTCGACATTGCCGGCTTCTTCCAGAAACTGGAGTCCGGCATCGACTTCATCGCGGAGGGAAAT CAATTTATCAATTCGGACTCGAGAATCACGCTTCCGGTATGGGCGGCGACAGCGGCGAGGAAGATCGAGTTCTGGACGGAGGCGGCGGAAGGCCGCCGGG CGACGGGAGGATGGTGGGTCCCTGAGGGAGGAAGTGGACGGGAACTTACGGCTCATTTGGATAAGGTGTTTTGGCGGTTGAGAGACGGAGGGTGGACGGA GGAAGAAGTGAGGGAGATGATGATAATGGACGGTGGCGATTCGCCGGAGAGCGGGGCCCAAATGAAGAAGAAGAAGGAGGATGTGGTGTGGCACGTGAGG ATGACGTCTGCCCGGGAACTATTGCGTGCTGGATGGAGCAGGGAAGATGTGGTGTACTCGCTTGATCTTCAGGATTCTGATCAGGAGGCGGTGTTCCCGC GTTCGGCGGCGGCGAGGAAATGGTCACCGTCTGCGACGTTTGACTTTCAGATTCCGAATCAGAATGGTTGTTGGAGACAAAGCGACGGCGATGGGCTGCG GAAGAGGAGTCTTGGGGACTTCATAAACCTGCATTCTCTCGAGGTCTAA
AA sequence Show only first row Show all	>Lus10011589 pacid=23142768 polypeptide=Lus10011589 locus=Lus10011589.g ID=Lus10011589.BGIv1.0 annot-version=v1.0 MPAPTVTAIQPLSRYRPPKPKSSSIAKHQVCFSFAAYAKKLIDHLKSLHITILPGLTDPEFSGLESQLNFQFPPDLRSILREGLPFGPNFPNWRSASLHQ LRILPALNLSRNIRFNHFWVDSWGTRPADTSQLKRTAKQLLHSAPPLVPIYRNCYIPASPSAAGNPVFYVDDKVVRILSFDIAGFFQKLESGIDFIAEGN QFINSDSRITLPVWAATAARKIEFWTEAAEGRRATGGWWVPEGGSGRELTAHLDKVFWRLRDGGWTEEEVREMMIMDGGDSPESGAQMKKKKEDVVWHVR MTSARELLRAGWSREDVVYSLDLQDSDQEAVFPRSAAARKWSPSATFDFQIPNQNGCWRQSDGDGLRKRSLGDFINLHSLEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22790			unknown protein		Lus10011589 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10042907 [exp]	12.6	0.7621
					Lus10036060 [exp]	36.6	0.7016
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	37.6	0.7157
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	43.5	0.6957
AT5G42965			Polynucleotidyl transferase, r...		Lus10001374 [exp]	53.4	0.7096
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	86.6	0.6719
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	102.9	0.6693
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	103.6	0.6835
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	108.4	0.6278
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	110.4	0.6587

Compare expression of checked genes

Lus10011589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.