Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65720 724 / 0 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) AT1G08490 110 / 3e-26 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1) AT1G27980 52 / 7e-07 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019252 [exp] 805 / 0 AT5G65720 734 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10011572 [exp] 489 / 6e-174 AT5G65720 439 / 1e-156 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10031670 [exp] 99 / 5e-22 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Lus10003129 [exp] 44 / 0.0004 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000600 [exp] 791 / 0 AT5G65720 716 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Potri.009G066000 [exp] 95 / 9e-21 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Potri.003G168800 [exp] 52 / 7e-07 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1) Potri.008G005101 [exp] 103 / 0.0002 AT5G65720 99 / 9e-06 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10011590 pacid=23142779 polypeptide=Lus10011590 locus=Lus10011590.g ID=Lus10011590.BGIv1.0 annot-version=v1.0 ATGGCCTCAAACCTTCTAACTTCCACCCTCCGCCAAACCCTAACCAAAGCCACCGCTTCCTCCGCGGCTCTCCGCAGCTTCTCAACCGCCGCCGCTGCCC CCGCTGCTTCTGTCATATCAACGGAGCCCTATGCGGAGCCCTATGAGGATCCGACCGGAGACATTAGGATTAAGGGCGTTAAAATTTCGGCTCGCCCGCT GTATCTGGATATGCAGGCGACCTCACCGGTGGATCCGCGTGTCCTTGACGCCATGCTTCCTTTCTACATCGGCCAGTACGGGAATCCTCACTCCCGAACC CACGTATACGGTTGGGAGTCGGAGCAAGCGGTGGAGACAGCTCGCAGTCAGGTCGCGGGCCTAATCGGAGCCTCGCCGAAGGAAATCATCTTCACTTCAG GAGCGACAGAGTCGAACAACATCTCCGTGAAGGGGGTGATGAAGTTTTACAAAGAGAAGAAGCGGCATGCCATCACCACTCAAACGGAGCACAAGTGCGT ACTGGATTCCTGCCGCCATCTTCAGCAGGAAGGGTTCGAAATCACTTATCTTCCCGTGAACGCCGATGGACTTGTGGACTTGCAGAAGTTACGAGCTGCA ATCCGGCCTGATACGGGGCTTGTGTCTATTATGGCGGTGAACAATGAAATTGGAGTGATTCAGCCGATGGAAGAGATTGGAGCGATTTGCAAGGAGTTCA AGGTTCCATTCCACACTGATGCTGCGCAGGCATTAGGTAAGATTCCTGTTGATGTTGATAAATGGAATGTGAGTTTGATGTCTCTGAGCGGGCACAAGAT CTATGGCCCCAAAGGTATTGGGGCTTTGTATATGAGGAGGAGGCCGAGAATCAGAGTAGAGCCTCAAATGAATGGAGGTGGACAAGAGAGAGGGATTCGA AGCGGGACTGTGCCCACTCCTCTGGTTGTGGGAATGGGAGCTGCGTGTGAGCTCGCAAAGAAGGAGATGGAGTATGATGAGAAGAGAATTACAGGTTTGC AGGAGAGGCTATTGAATGGGATTAACTCGAAACTGGACGGCATAGTGGTGAATGGGAGTGTGGAGAAGCGATATGCAGGTAACTTGAATATCTCGTTTGC TTATGTTGAAGGTGAGAGCTTGTTGATGGGGCTTAAGGAGGTGGCAGTCTCTAGTGGGAGTGCTTGCACTAGTGCCAGTTTGGAACCCTCGTATGTTTTG AGGGCTTTGGGCGTGGATGAAGATATGGCACATACTTCAATTAGATTTGGAATTGGGAGGTTTACTACCGAGGAAGAGATTGATAAGGCGGTGGAGCTTA CAGTGGAGCAAGTTGAGAAGCTGAGGGAAATGAGTCCTTTGTATGAAATGGTTAAGGAAGGAATAGACATCAAGTCCATTCAATGGGCACAACATTGA
AA sequence Show only first row Show all	>Lus10011590 pacid=23142779 polypeptide=Lus10011590 locus=Lus10011590.g ID=Lus10011590.BGIv1.0 annot-version=v1.0 MASNLLTSTLRQTLTKATASSAALRSFSTAAAAPAASVISTEPYAEPYEDPTGDIRIKGVKISARPLYLDMQATSPVDPRVLDAMLPFYIGQYGNPHSRT HVYGWESEQAVETARSQVAGLIGASPKEIIFTSGATESNNISVKGVMKFYKEKKRHAITTQTEHKCVLDSCRHLQQEGFEITYLPVNADGLVDLQKLRAA IRPDTGLVSIMAVNNEIGVIQPMEEIGAICKEFKVPFHTDAAQALGKIPVDVDKWNVSLMSLSGHKIYGPKGIGALYMRRRPRIRVEPQMNGGGQERGIR SGTVPTPLVVGMGAACELAKKEMEYDEKRITGLQERLLNGINSKLDGIVVNGSVEKRYAGNLNISFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVL RALGVDEDMAHTSIRFGIGRFTTEEEIDKAVELTVEQVEKLREMSPLYEMVKEGIDIKSIQWAQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	0	1
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	2.2	0.9001
AT3G51650			unknown protein		Lus10025247 [exp]	2.6	0.8694
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	3.5	0.8710
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	3.5	0.8877
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	3.7	0.8996
AT4G01400			unknown protein		Lus10002675 [exp]	4.2	0.8369
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	5.2	0.8630
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	5.7	0.8645
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10025725 [exp]	5.8	0.8231
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	6.0	0.8866

Compare expression of checked genes

Lus10011590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.