Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37810 97 / 9e-27 unknown protein AT5G10310 61 / 1e-12 unknown protein AT2G30370 49 / 6e-08 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT3G13898 44 / 2e-06 unknown protein AT3G22820 44 / 2e-06 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT4G14723 41 / 2e-05 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007240 [exp] 75 / 2e-17 AT4G37810 75 / 2e-17 unknown protein Lus10028241 [exp] 68 / 9e-16 AT4G37810 74 / 2e-18 unknown protein Lus10019254 [exp] 65 / 3e-14 AT4G37810 74 / 5e-18 unknown protein Lus10011570 [exp] 62 / 3e-13 AT4G37810 79 / 8e-20 unknown protein Lus10035922 [exp] 57 / 2e-11 AT5G10310 100 / 2e-28 unknown protein Lus10025740 [exp] 57 / 3e-11 AT5G10310 100 / 2e-28 unknown protein Lus10008387 [exp] 57 / 3e-11 AT3G13898 76 / 9e-19 unknown protein Lus10006016 [exp] 59 / 6e-11 AT3G13898 76 / 4e-17 unknown protein Lus10021901 [exp] 47 / 3e-07 AT4G14723 104 / 2e-30 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112900 [exp] 104 / 1e-29 AT4G37810 90 / 9e-24 unknown protein Potri.007G095400 [exp] 64 / 1e-13 AT5G10310 105 / 2e-30 unknown protein Potri.003G042300 [exp] 54 / 5e-10 AT3G13898 80 / 4e-20 unknown protein Potri.005G073700 [exp] 52 / 2e-09 AT5G10310 102 / 7e-29 unknown protein Potri.018G130700 [exp] 44 / 2e-06 AT1G80133 62 / 1e-13 unknown protein Potri.013G155500 [exp] 43 / 6e-06 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.008G157300 [exp] 42 / 9e-06 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.019G128200 [exp] 39 / 0.0002 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011591 pacid=23142776 polypeptide=Lus10011591 locus=Lus10011591.g ID=Lus10011591.BGIv1.0 annot-version=v1.0 ATGGGAAACTTGTTATTCAGCTCAATACTCATCAGGTTAGCTGTATCCTCCATATTGCTTCTTTTGATTTCGGGCTCTACCCGAGTGAGATTCCACGTTC AAGGCAGAGCAGTTCCCAAGTCTTCTAGCTTGTCACAGGCAGGAAATAGAGAGGAAGAGGCGATGATAATGAAGGCGGAAATAGGGTCAAGGCCACCGAG ATGTGAGAAAAGATGCAGTTGGTGTGGGCATTGTGATGCCATCCAGATCCCCATTAATCCTCAACTAACTGGGAATCACAGATCATCAGCATCATCAACA CTCTCCTCCGTTAGTAATACAGAGTATGCCAAAGGAGATGACTTCTACTCCAATTACAAACCCATGAGTTGGAAATGCAAGTGCGGCAACTTCATCTTCA ACCCATAG
AA sequence Show only first row Show all	>Lus10011591 pacid=23142776 polypeptide=Lus10011591 locus=Lus10011591.g ID=Lus10011591.BGIv1.0 annot-version=v1.0 MGNLLFSSILIRLAVSSILLLLISGSTRVRFHVQGRAVPKSSSLSQAGNREEEAMIMKAEIGSRPPRCEKRCSWCGHCDAIQIPINPQLTGNHRSSASST LSSVSNTEYAKGDDFYSNYKPMSWKCKCGNFIFNP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37810			unknown protein		Lus10011591 [exp]	0	1
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	3.3	0.8088
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	4.2	0.8066
AT5G10310			unknown protein		Lus10025740 [exp]	6.9	0.7998
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012899 [exp]	6.9	0.7443
AT5G02440			unknown protein		Lus10023770 [exp]	8.4	0.7831
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	9.5	0.7857
					Lus10007510 [exp]	11.8	0.7494
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	13.4	0.7192
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	15.1	0.7834
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10014726 [exp]	16.1	0.7299

Compare expression of checked genes

Lus10011591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.