Plant FIBer expression Database

Lus10011601 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13980 46 / 4e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
AT4G29090 42 / 2e-05 Ribonuclease H-like superfamily protein (.1)
AT3G25270 40 / 5e-05 Ribonuclease H-like superfamily protein (.1)
AT4G09775 39 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004409
[exp]
64 / 5e-14 ND 39 / 5e-04
Lus10039942
[exp]
54 / 3e-10 AT2G34320 45 / 7e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10009101
[exp]
49 / 1e-08 ND 35 / 0.003
Lus10043127
[exp]
49 / 5e-08 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1)
Lus10022194
[exp]
38 / 0.0006 AT3G21540 76 / 8e-15 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10011601 pacid=23142769 polypeptide=Lus10011601 locus=Lus10011601.g ID=Lus10011601.BGIv1.0 annot-version=v1.0
ATGAACGGATGCAAGAAGTGGCATCGTCCGCCGGAAGGGGTGCTGAAATTGAATGTCGATGCCGCTTTCTTCCCGGACCGTTCTTGCTCCGGAGTGTGCA
GGGTGCTGCGGGGTCGAGTTGGACAAGTGATGAGATATAAACATATTCTTTTTGATGGCGTCCCCGGTACAAAGGAAGGAGAGGCGAAGGCAATATTGGC
AGGTATGAAGTGGGCAGCGGAGATGGATTATTCAAATATCATTCTTGAAGCTGATTGTCAAATGGTCGGAGAGCAATTGCGGGAGAGATTTCAGATGTTA
TAA
AA sequence
>Lus10011601 pacid=23142769 polypeptide=Lus10011601 locus=Lus10011601.g ID=Lus10011601.BGIv1.0 annot-version=v1.0
MNGCKKWHRPPEGVLKLNVDAAFFPDRSCSGVCRVLRGRVGQVMRYKHILFDGVPGTKEGEAKAILAGMKWAAEMDYSNIILEADCQMVGEQLRERFQML

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G13980 Polynucleotidyl transferase, r... Lus10011601
[exp]
0 1
AT5G17540 HXXXD-type acyl-transferase fa... Lus10020333
[exp]
3.5 0.8348
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Lus10017676
[exp]
6.2 0.7232
AT2G31180 MYB ATMYB14, Myb14a... ARABIDOPSIS THALIANA MYB DOMAI... Lus10022021
[exp]
8.2 0.8119
AT4G01575 serine protease inhibitor, Kaz... Lus10009865
[exp]
8.6 0.6419
AT3G02100 UDP-Glycosyltransferase superf... Lus10003456
[exp]
10.1 0.8119
AT4G29340 PRF4 profilin 4 (.1) Lus10012935
[exp]
11.7 0.8119
AT2G04810 Protein of unknown function (D... Lus10020538
[exp]
13.0 0.8087
AT5G50960 ATNBP35, NBP35 nucleotide binding protein 35 ... Lus10036588
[exp]
13.4 0.7367
AT3G09290 C2H2ZnF TAC1 telomerase activator1 (.1) Lus10021213
[exp]
14.3 0.8069
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10006697
[exp]
15.9 0.7511

Lus10011601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.