Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65760 747 / 0 Serine carboxypeptidase S28 family protein (.1) AT2G24280 535 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G22860 354 / 3e-117 Serine carboxypeptidase S28 family protein (.1.2) AT4G36190 115 / 1e-27 Serine carboxypeptidase S28 family protein (.1) AT4G36195 108 / 4e-25 Serine carboxypeptidase S28 family protein (.1.2.3) AT3G28680 95 / 2e-22 Serine carboxypeptidase S28 family protein (.1) AT2G18080 100 / 3e-22 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039645 [exp] 462 / 2e-161 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10021325 [exp] 461 / 2e-158 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10005354 [exp] 421 / 5e-143 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10017002 [exp] 412 / 5e-141 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10021400 [exp] 415 / 6e-141 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 349 / 2e-115 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 344 / 3e-113 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10028365 [exp] 107 / 2e-24 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 72 / 1e-13 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008100 [exp] 798 / 0 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.018G111000 [exp] 528 / 0 AT2G24280 728 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G207900 [exp] 516 / 0 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G232300 [exp] 413 / 6e-140 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 409 / 4e-139 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 409 / 8e-139 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 408 / 3e-138 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 392 / 4e-132 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 378 / 3e-126 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 370 / 1e-123 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10011603 pacid=23142774 polypeptide=Lus10011603 locus=Lus10011603.g ID=Lus10011603.BGIv1.0 annot-version=v1.0 ATGGGAATCTCCGTTCAACAGCTGCTCCTCCTTCTTCAACTTCTTTTCTTGATCTTCATCTCCGCCACTGCCGTCCTCCCTACATCTTCTAGATCACCGC GGTTTCTTGGTAAACGGTCCCAGCCTATTAATCTTCAACGCGAACAGCAGTACTCTTACCAGACTCGCTACTTCCTCCAGGACCTCGATCATTTCAGCTT CTCCGAGCTCCCTAAGTTCCGGCAACGCTACCTCATGAACACCGAGCATTGGGCCGGTCCTCAACGGCAGGGACCGATTTTCCTTTACTGTGGAAACGAG GGTGACATTGAGTGGTTCGCTGTCAATACTGGCTTTGTGTGGGAGATCGCTCCAAAGTTTGGTGCCATGATCCTTTTCCCCGAGCATCGCTACTACGGGG AATCGATGCCGTACGGGAGTAGAGACGAAGCTTATAAGAATGCTACTACATTGGCGCATCTAACTGCCGAGCAAGCACTTGCTGATTTCGCAGTGTTGAT TACAGACTTGAAGAGGAATTTATCCGCCGAGAATTGCCCGGTGGTGTTGTTTGGTGGATCTTATGGAGGAATGTTAGCAACGTGGATGAGGCTCAAGTAT CCTCACCTGACCGTTGGTGCACTGGCTTCATCAGCTCCAATTCTTCAATTCGAAAATATCGTGCCACTGGACACGTTTTACAACATCCGCGAGAGTACCA GCTGCTTTGATACTATAAAGAAGTCATGGTGTGAAGTAGAGGCTGAGGGTCGGAAAGACAATGGCCTTTCACTATTAACCAAAACTTTCAATTTCTGCAG GGAGTTGAAAAGTACTGGAGATCTCGTCAACTGGCTAGAATCTGCTTATAGTTATTTAGCAATGGTGGATTACCCTTATCCCTCTTCCTTCATGATGCCT CTGCCTGGCCACCCAATTAGAGAGGTCTGCAGAAAGATTGATGGTAGTCCTGAGGGGAGTAGCATATTGGAGCGCATTTTTGCAGGTGTCAGTGTCTATT ATAATTACACTGGCACAGTTAGCTGCTTTGAACTTGATGATGATCCACATGGTTTGGATGGCTGGAACTGGCAGGCATGCACCGAGATGGTTATGCCAAT GTCTAGTGACAAGGAAACAAGTATGTTCCCTCCCTATGAATTCAGTTACTCTGATTTCCGAGAAGAATGTTGGAGCAGTTTCAAAGTGCTGCCAAGGCCT AGATGGGTAACAACAGAATTCGGTGGACATGATATCCGCACTGCCTTGGAAACATTTGGGAGCAACATGATCTTCTCTAACGGCCTGCTGGATCCATGGA GTGGTGGCAGCGTTTTGCAGAATATTTCTAAAACAATTGTTGCCCTAGTTACCAAAGAAGGCGCCCATCACATTGATTTGCGGCCCTCGACTCCTGAGGA TCCTGACTGGTTGATCGAGCAGAGGGAAACTGAGATCAAGCTTATACGAGGATGGATAGATGATTACTACCGGATGAAGCATAAGAAATTAACTTCCAAC ATGTAG
AA sequence Show only first row Show all	>Lus10011603 pacid=23142774 polypeptide=Lus10011603 locus=Lus10011603.g ID=Lus10011603.BGIv1.0 annot-version=v1.0 MGISVQQLLLLLQLLFLIFISATAVLPTSSRSPRFLGKRSQPINLQREQQYSYQTRYFLQDLDHFSFSELPKFRQRYLMNTEHWAGPQRQGPIFLYCGNE GDIEWFAVNTGFVWEIAPKFGAMILFPEHRYYGESMPYGSRDEAYKNATTLAHLTAEQALADFAVLITDLKRNLSAENCPVVLFGGSYGGMLATWMRLKY PHLTVGALASSAPILQFENIVPLDTFYNIRESTSCFDTIKKSWCEVEAEGRKDNGLSLLTKTFNFCRELKSTGDLVNWLESAYSYLAMVDYPYPSSFMMP LPGHPIREVCRKIDGSPEGSSILERIFAGVSVYYNYTGTVSCFELDDDPHGLDGWNWQACTEMVMPMSSDKETSMFPPYEFSYSDFREECWSSFKVLPRP RWVTTEFGGHDIRTALETFGSNMIFSNGLLDPWSGGSVLQNISKTIVALVTKEGAHHIDLRPSTPEDPDWLIEQRETEIKLIRGWIDDYYRMKHKKLTSN M

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10011603 [exp]	0	1
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10033669 [exp]	1.4	0.7728
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	3.6	0.7991
AT1G18890		CPK10, ATCDPK1,...	calcium-dependent protein kina...		Lus10036667 [exp]	8.3	0.7525
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	12.0	0.7147
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	12.1	0.7266
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10035801 [exp]	12.4	0.7159
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	24.2	0.6874
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	26.3	0.7385
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	29.8	0.7428
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	30.3	0.7147

Compare expression of checked genes

Lus10011603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.