Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49680 543 / 0 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT5G65780 538 / 0 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G10070 431 / 3e-150 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT1G50110 391 / 5e-135 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50090 390 / 2e-134 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10060 385 / 2e-132 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT3G19710 343 / 2e-116 BCAT4 branched-chain aminotransferase4 (.1) AT5G27410 67 / 6e-12 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 63 / 1e-10 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011567 [exp] 640 / 0 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10019258 [exp] 637 / 0 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 413 / 5e-144 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007247 [exp] 403 / 7e-139 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028246 [exp] 407 / 1e-138 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 375 / 2e-129 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 262 / 2e-85 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10035342 [exp] 50 / 2e-06 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008000 [exp] 578 / 0 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.002G113600 [exp] 429 / 2e-149 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 397 / 3e-137 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 389 / 8e-134 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.005G039100 [exp] 65 / 3e-11 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10011604 pacid=23142770 polypeptide=Lus10011604 locus=Lus10011604.g ID=Lus10011604.BGIv1.0 annot-version=v1.0 ATGGAGAGAGCCGCCTTCCTTCGACAAGGAGGCCTGCACCCAAACCATTGTCTTCTCCCTCCCTCCCGCAACACATTCGCTGCCGCTGATATTTGCAGTC TCCATGTCTTCAATCCTTGTTCGTCTTCTTCTCTCAGGCTTCAGAAGCAGCTTCCTTCACTTACCGCACTGCATTCTGTCTCCCCTTTCAAGCGGGACGC CGTCGCTTCCTTCTCTTACAGCACCGAAACTGCCAAAGTGGATAGTATAGATTGGGACAACCTGGGATTTCAATACACGGCAACTGATTACATGTATATG ATGAAATGTGAACGAGACGGAAACTTTTCCAACGGTGAACTACACCCTTTTGGCAACATCGAGTTGAGCCCATCTGCTGGAGTTTTAAACTATGGCCAGG GACTGTTTGAGGGTCTGAAGGCTTACAGGAAAGAAGATGGAAATATCTTACTGTTTCGTCCAGAGGAAAATGCTCTTCGTATGCAAACAGGTGCAGACAG AATGTGCATGCCAGCTCCAACTGTTGAACAATTTCTGGAAGCTGTAAAGGCAACCGTTTTAGCAAATAAGCGCTGGGTACCCCCTCCTGGTAAAGGGTCC TTATACATAAGGCCATTGCTGATGGGAAGTGGAGCTGTTCTTGGTGTTTCTCCCGCACCTGAGTACACATTTTTAATCTACGTTTCACCTGTAGGAAACT ACTTTAAGGAAGGTCTTGCACCAATTAATTTGATTGTTGAGAATGAGCTTCATAGAGCAACTCCTGGTGGTACTGGAGGTGTGAAGACCATAGGGAACTA TGCTGCTGTTCTCAAGGCGCAATCTGCTGCTAAAGCCAAAGGTTATTCTGATGTTCTGTATCTTGACTGTGTCAATAAGAAGTATCTGGAGGAGGGTAAC ACAATATCTACTCCTGCAATTAAGGGGACAATCCTTCCTGGCATCACAAGAAAAAGCATAATTGATGTTGCTCGAAGCCAAGGGTTCCAGGTTGAAGAAC GACTTGTGGAAGTGGATGAATTAATTACTGCCGATGAAGTTTTCTGTACTGGAACAGCTGTGGTTGTATCACCTGTTGGAAGCATTACTTACAAGGGTGA AACAAAGAAGTATGGACGAGGAGGTGTTGGTGCTGTGTCGCGAAAGCTGTACAATGTGCTGACGAGTATCCAGATGGGTCTTGTAGAGGACAAGATGAAG TGGACGTTGGACCTGAGTTAA
AA sequence Show only first row Show all	>Lus10011604 pacid=23142770 polypeptide=Lus10011604 locus=Lus10011604.g ID=Lus10011604.BGIv1.0 annot-version=v1.0 MERAAFLRQGGLHPNHCLLPPSRNTFAAADICSLHVFNPCSSSSLRLQKQLPSLTALHSVSPFKRDAVASFSYSTETAKVDSIDWDNLGFQYTATDYMYM MKCERDGNFSNGELHPFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENALRMQTGADRMCMPAPTVEQFLEAVKATVLANKRWVPPPGKGS LYIRPLLMGSGAVLGVSPAPEYTFLIYVSPVGNYFKEGLAPINLIVENELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVNKKYLEEGN TISTPAIKGTILPGITRKSIIDVARSQGFQVEERLVEVDELITADEVFCTGTAVVVSPVGSITYKGETKKYGRGGVGAVSRKLYNVLTSIQMGLVEDKMK WTLDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	0	1
AT5G60890	MYB	AtMYB34, MYB34,...	ALTERED TRYPTOPHAN REGULATION ...		Lus10015713 [exp]	2.0	0.8026
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	2.4	0.8035
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	3.9	0.7797
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10042689 [exp]	5.3	0.6929
AT2G31810			ACT domain-containing small su...		Lus10027061 [exp]	7.7	0.7480
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	9.6	0.7490
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	11.8	0.7308
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	14.5	0.6985
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008713 [exp]	25.3	0.6285
AT5G66360		DIM1B	adenosine dimethyl transferase...		Lus10041797 [exp]	29.9	0.6679

Compare expression of checked genes

Lus10011604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.