Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25790 779 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 409 / 1e-126 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 403 / 1e-124 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 401 / 1e-123 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 395 / 2e-121 HSL1 HAESA-like 1 (.1) AT3G49670 388 / 1e-118 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 383 / 1e-116 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 370 / 3e-112 HSL2 HAESA-like 2 (.1) AT5G61480 368 / 6e-111 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 367 / 1e-110 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006045 [exp] 1721 / 0 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 426 / 9e-133 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 426 / 1e-132 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 419 / 1e-129 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 409 / 2e-126 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038930 [exp] 403 / 8e-124 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027951 [exp] 400 / 4e-123 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 400 / 9e-123 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10036242 [exp] 390 / 1e-119 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237400 [exp] 1028 / 0 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G045500 [exp] 1011 / 0 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 424 / 4e-132 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G073600 [exp] 423 / 8e-132 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 419 / 5e-130 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.013G048800 [exp] 413 / 5e-128 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 412 / 1e-127 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 411 / 2e-127 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G157300 [exp] 411 / 2e-127 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 400 / 1e-123 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011609 pacid=23150936 polypeptide=Lus10011609 locus=Lus10011609.g ID=Lus10011609.BGIv1.0 annot-version=v1.0 ATGGCCAACCAATCCAAAACCTTGCAAACATTCTTCTTCTTGTTATCACTATCCCTGCTGATGAATTCTCCATTGTTGCTTGCCCAGGACCAAGAAAAAG GTGAGCTTGATATTCTCCTCTCTTTCAAATCCTCTATCCACGACCCTTTCAAACACCTATCCAATTGGAATCATTCAAATGTCTGCAACTGGCAAGGTAT CACTTGTGTTAATAATAATAATAATTCCTCTCATGTCACTGCCATCAACCTCCCTTGCAAAAACTTATCTGGCCCTATTCCTACCTCAATCTTCCACCTC CCTTATCTCCAATCCATCAATCTCTCCGCAAACCAGTTCTCCGGAGAAATCCCACAAACCATATTCTCCAGCTTATCTCTCCAACATCTCAACCTCAGCA ACAACAACCTCACCGGCTCCCTCCCCCAAATGATCTCGCCCATCTTGATGGAGACACTGGATCTCTCCAGTAATATACTCACAGGGGGAATCCCAGAAAA CATTGGGTCTCTTTCCAGATTGAGATACCTGGATCTTGGAGGGAATCTGTTGGTGGGCAAGATTCCAATCTCCATAACCAACATTTCGGGCTTGGAAAGC TTGACACTTGCTACCAACAAACTAGTGGGAGAAATCCCCAAGCAATTGGGTACAAGATTGAAGAACCTCAAATGGGTTTACTTGGGTTACAATAACTTCT CCGGCGAAATCCCTCGAGAAATTGGTGGGTTGTCTTTTCTCAACCATCTGGACCTTGTTTACAACAATCTCACCGGAGGAATCCCTTCTTCTTTTGGGAA TCTCACCAATCTTCAGTACCTTTTCCTCTACCAGAACAAGTTGACCGGTCCGATTCCAGCTTCGATTTTCCGCCTCGAGAATTTGGTGTCGCTGGATTTG AGCGACAACTCCTTGTCGGGCGAAATCCCAAAAGATATGTTTCGGATGCAGAGGTTGGAAATCCTTCACCTCTTCTCCAACAACTTCACCGGCGAAATCC CAGTCGCTCTAAGTTTCCTGACGAGCCTTCAGGTTCTTCAGCTCTGGTCAAATAAGTTCACCGGTGAGATTCCACAAGGACTTGGAAAACAGAGTAATCT CACTGTTTTAGACCTATCAACGAATTTTCTCACGGGGAGGATTCCGGACACAGTTTGCAGCTCTGGGAGTTTATTTAAGCTGATTCTGTTCACCAACTCA CTGGAGGGAGAAATTCCCGATAGCTTGAGCTCTTGCAGAAGCCTCAGGAGGGTGCGCCTACAGAACAATAAGCTGTCCGGCGAACTGTCGCCGGAGTTCA CCAGGCTGCCACTTGTCTACTTCCTTGACATTTCCGGGAACAAGCTTTCTGGGAGGATTGGTCGCCGGAGATGGGAGATGCCGTCGCTTCAGATGCTGAA TTTAGGCAACAATCGGTTTTCCGGCCCCCTTCCTGACTCGTTCGGCAGCGACAAACTAGAGAATTTGGACCTGTCGGAAAATAACTTTTCCGGTACTATT CCGGCGACGGCCGTTGGGAGCTTAACCGAATTAATACAGCTGAAACTGAGCAAAAATCAGCTCTCGGGTGAAATTCCAGGAAAGCCCTTGTCTTCCTGTA AGAAGCTTGTGAGTCTAGACCTCAGCCACAATAAGCTCACCGGTACAATCCCTGCCAACCTCGCCGAACTGCCGGTTTTGGGTCAGCTCGACTTGTCGAA TAACGATTTATCAGGAGAAATCCCAAAAAGCTTGGGAAGAATGGAGTCGCTAATCCAGATCAACATCTCACACAATTATTTCCACGGTGATTTGCCATTG GCTGGAGCCTTTGTAGCTATAAACGCCACCGCCGTCGCGGGGAACAATCTCTGCACCGGAGTAGGAGAAACCATCTCCAGTGGATTGCCTCGCTGCCGGA GAACTAATAATAGCAAAAGCTCCGTAATTTGGCACAATTACTTGGTCGCGTGTATAATCGGCACCGTGGCTTTCCTCGCTCTGGCTTCTTACGCCGTCGT TTTGATTACTCGAAGACGCACCATTATTAAAGTTGAGAATCAAGAAGATGGGAACACGTGGGAGCTGAGGCTTTTCAAATCCAGCAAGATTTCGAGGTCG ATTACAGTGGAAAACATTCTTGGTTCAAGGAAGGACGGGAACGTCATTTCCAGGGGCGGCCAGAAAACAGGGAACTCTGTTTTTTCCATCTCGTACATGG TCGGGAATTCCAGATTTAACAATGCATCCGACCAACATGAACATACACGGTTCGTGGTGAAGGAAATAGCGAGCGAGTACGTCAGTTCAATTCCTCCGAG TTTCTGGGCCGACGTTGAGGAACTCGGAAGGGTTAAGCATCCGAATGTGGTGAAATTGATCGGAGTGCTGAGGTCTAATAAAGAGGACGCGTGTTTAGTG TACGAGTACATCGAAGGGAGGAATTTGAACCAAGTAGCTCGCAGCTTGAGCTGGGAAAAAAGGAAAAGACTCACGATAAGCATTGCCAAAGCTCTCTGGT TCTTGCACAGCCGTGGAATCATCGTCGGATGCATGTCGCCGGAGAAGATAATCGTTGACGGAAAACATGAGCCTCATCTGGAATTAACTCCACCTGATTT GCTCAACTTTGGCACCAAATGTTTTGATTCTTCCAAGCATCTTGCTCCAGAAACAAAAGAAAGGAAGGAGTTGACGGAGAAAGGGGATATATACGGATTC GGGTTGATACTGATCCAGTTGATAACCGGAAAAGGAGCGGTGGACGAAGAGTTAGGAGTGGAAGAGAGCATAGTGGAGTGGGCTAGGTATTGCTACTCGG ACTGCCATATGGAGACATGGGTCGACCCGATGGTGATGATGAAGCATCAAAACGAAGTGGTGGAAGCCATGAACTTGGCTCTCCGTTGCACAGCTACCGA CCCGGTGGCCCGGCCGTATGCAAAAGAGGTGGGGAGAAATGCAAAAGAGGTCTCCAAAACCCTTGAGTCGGCATATTTCTCTGGATCTTCTTGTGCCGGC TCGGCTGTCGAGTTCTAG
AA sequence Show only first row Show all	>Lus10011609 pacid=23150936 polypeptide=Lus10011609 locus=Lus10011609.g ID=Lus10011609.BGIv1.0 annot-version=v1.0 MANQSKTLQTFFFLLSLSLLMNSPLLLAQDQEKGELDILLSFKSSIHDPFKHLSNWNHSNVCNWQGITCVNNNNNSSHVTAINLPCKNLSGPIPTSIFHL PYLQSINLSANQFSGEIPQTIFSSLSLQHLNLSNNNLTGSLPQMISPILMETLDLSSNILTGGIPENIGSLSRLRYLDLGGNLLVGKIPISITNISGLES LTLATNKLVGEIPKQLGTRLKNLKWVYLGYNNFSGEIPREIGGLSFLNHLDLVYNNLTGGIPSSFGNLTNLQYLFLYQNKLTGPIPASIFRLENLVSLDL SDNSLSGEIPKDMFRMQRLEILHLFSNNFTGEIPVALSFLTSLQVLQLWSNKFTGEIPQGLGKQSNLTVLDLSTNFLTGRIPDTVCSSGSLFKLILFTNS LEGEIPDSLSSCRSLRRVRLQNNKLSGELSPEFTRLPLVYFLDISGNKLSGRIGRRRWEMPSLQMLNLGNNRFSGPLPDSFGSDKLENLDLSENNFSGTI PATAVGSLTELIQLKLSKNQLSGEIPGKPLSSCKKLVSLDLSHNKLTGTIPANLAELPVLGQLDLSNNDLSGEIPKSLGRMESLIQINISHNYFHGDLPL AGAFVAINATAVAGNNLCTGVGETISSGLPRCRRTNNSKSSVIWHNYLVACIIGTVAFLALASYAVVLITRRRTIIKVENQEDGNTWELRLFKSSKISRS ITVENILGSRKDGNVISRGGQKTGNSVFSISYMVGNSRFNNASDQHEHTRFVVKEIASEYVSSIPPSFWADVEELGRVKHPNVVKLIGVLRSNKEDACLV YEYIEGRNLNQVARSLSWEKRKRLTISIAKALWFLHSRGIIVGCMSPEKIIVDGKHEPHLELTPPDLLNFGTKCFDSSKHLAPETKERKELTEKGDIYGF GLILIQLITGKGAVDEELGVEESIVEWARYCYSDCHMETWVDPMVMMKHQNEVVEAMNLALRCTATDPVARPYAKEVGRNAKEVSKTLESAYFSGSSCAG SAVEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25790			Leucine-rich receptor-like pro...		Lus10011609 [exp]	0	1
AT2G25790			Leucine-rich receptor-like pro...		Lus10006045 [exp]	4.8	0.7664
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10016083 [exp]	11.8	0.7226
AT4G22120			ERD (early-responsive to dehyd...		Lus10002996 [exp]	19.8	0.7291
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006057 [exp]	26.2	0.7284
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	30.4	0.7263
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	38.3	0.7163
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	39.7	0.6992
AT3G13980			unknown protein		Lus10037659 [exp]	44.2	0.7050
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	56.8	0.7138
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	58.7	0.6991

Compare expression of checked genes

Lus10011609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.