Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031452 [exp] 263 / 1e-88 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G174900 [exp] 172 / 3e-52 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011613 pacid=23150929 polypeptide=Lus10011613 locus=Lus10011613.g ID=Lus10011613.BGIv1.0 annot-version=v1.0 ATGTTCGTCACCAGGAGAACAAAAGTTAAAGATAGTGAGCTGGTAGATGATTTTATTTCTGTTGGCTGCCAGTTATGTGGTTCCCCTTTGCAAATGGATT ATGGGCTCAATCAGAAGTCTGCTTCTCTCTCTTGCCCGAAGAGCTCGAACGGTGTCCATGCAGTAAGCTCGATATATTGTCCGTTCATGGTATACGTGTG GGATGAATCGGATTATTTGCCGCTCTTAGTAAGGAACAAGGCAGCAGAGCTTCTGTTTGGAAACATCAAAGCTGAAAGAGTGAAGTCCTGTTACGATAGA GAGAGTGGAATCAATGCCTCGCAGAAACGTGGTTCTGGCAAGAGCATCAACTTCCATCTCATTTGGGTGATGCTTCTGACGATGTTGTTGGAGCAAGGCA AAAACGGTCCCTTGAAGTTTGAAGTGGATGTGAATCCAAGCTTCGATAGTATGGCAAGTTTGAGGTTTCGTCTGTGTCAATTCCATGCAGCAAAACTCGT TTCAATGTTTCAATGA
AA sequence Show only first row Show all	>Lus10011613 pacid=23150929 polypeptide=Lus10011613 locus=Lus10011613.g ID=Lus10011613.BGIv1.0 annot-version=v1.0 MFVTRRTKVKDSELVDDFISVGCQLCGSPLQMDYGLNQKSASLSCPKSSNGVHAVSSIYCPFMVYVWDESDYLPLLVRNKAAELLFGNIKAERVKSCYDR ESGINASQKRGSGKSINFHLIWVMLLTMLLEQGKNGPLKFEVDVNPSFDSMASLRFRLCQFHAAKLVSMFQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011613 [exp]	0	1
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10023709 [exp]	1.0	0.7895
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10026005 [exp]	8.7	0.7223
					Lus10026259 [exp]	13.6	0.6835
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10041597 [exp]	17.1	0.7164
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	21.5	0.6191
AT3G20430			unknown protein		Lus10024443 [exp]	27.9	0.6166
					Lus10028601 [exp]	28.1	0.6730
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	29.7	0.6899
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	45.9	0.6612
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10008450 [exp]	89.8	0.5777

Compare expression of checked genes

Lus10011613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.