Plant FIBer expression Database

Lus10011614 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21930 132 / 2e-40 unknown protein
AT3G42150 131 / 4e-40 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017643
[exp]
164 / 7e-53 AT3G42150 130 / 4e-41 unknown protein
Lus10031451
[exp]
156 / 3e-50 AT3G42150 104 / 6e-31 unknown protein
Lus10033601
[exp]
134 / 2e-39 ND 111 / 2e-31
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G086300
[exp]
149 / 4e-47 AT1G21930 140 / 4e-45 unknown protein
PFAM info
Representative CDS sequence
>Lus10011614 pacid=23150928 polypeptide=Lus10011614 locus=Lus10011614.g ID=Lus10011614.BGIv1.0 annot-version=v1.0
ATGATCTATGCACATATATTTTGGTATACAGAGGCCGTTGGCGCCGCGTCTCGCAAGGATCGCGATTCCTCCCTCCCAACGGATTTCTCAGCTCACCCCG
ACGATCTTCAGGTCTCACGATCGCGAGCGATTATTAGGGTTCCTGACATTCCCTATCTTTCTGTAGCTGAAATTTGGGAGAGGCTGCTGATCGAAGAAGC
TTTGAAGAGTGCAAGAATGGCGGGGCAGCAGCAGGAGAAGGTTAAACACATTGAGGAGTGTTCAGTTGCAAATGCAATGGGGACATGGTTCTTTTCGGCA
GCTGGGGCGCTGATAGCGATTCCAGTTGGGATAAAGAAGAAGTCGTTAGCTCCACTAGTGTTCTTTGGCACAACAGGGACAATGCTTGACATAATAATGG
GTATCAGCCAGTGTGAAAGAGAGCATGCAGAGCGCCAAGCAATGCTGCTAGAAACCCAGAATGCTGCACCAGTTGATGGAGAGCTTTCTGCCACAGGATC
TTCGGAATCTTGA
AA sequence
>Lus10011614 pacid=23150928 polypeptide=Lus10011614 locus=Lus10011614.g ID=Lus10011614.BGIv1.0 annot-version=v1.0
MIYAHIFWYTEAVGAASRKDRDSSLPTDFSAHPDDLQVSRSRAIIRVPDIPYLSVAEIWERLLIEEALKSARMAGQQQEKVKHIEECSVANAMGTWFFSA
AGALIAIPVGIKKKSLAPLVFFGTTGTMLDIIMGISQCEREHAERQAMLLETQNAAPVDGELSATGSSES

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G42150 unknown protein Lus10011614
[exp]
0 1
AT3G62920 unknown protein Lus10005942
[exp]
1.0 0.8025
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Lus10011695
[exp]
4.9 0.7519
AT1G05430 unknown protein Lus10010563
[exp]
6.5 0.7294
AT1G09630 ATRAB-A2A, ATRA... ARABIDOPSIS RAB GTPASE A2A, RA... Lus10036441
[exp]
8.1 0.6827
AT3G60820 PBF1 N-terminal nucleophile aminohy... Lus10000062
[exp]
9.4 0.7182
AT1G64750 DSS1(I), ATDSS1... deletion of SUV3 suppressor 1(... Lus10030583
[exp]
11.5 0.7902
AT5G20180 Ribosomal protein L36 (.1.2) Lus10019412
[exp]
18.3 0.7278
AT1G63460 ATGPX8 glutathione peroxidase 8 (.1) Lus10000601
[exp]
19.9 0.7623
AT2G37120 S1FA-like DNA-binding protein ... Lus10023177
[exp]
20.6 0.7416
AT3G13845 unknown protein Lus10015617
[exp]
21.4 0.7219

Lus10011614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.