Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32880 1269 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT1G52150 1266 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT2G34710 1033 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 1016 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1009 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G79840 91 / 1e-18 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT5G52170 79 / 7e-15 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 77 / 3e-14 HD PDF2 protodermal factor 2 (.1) AT4G17710 76 / 9e-14 HD HDG4 homeodomain GLABROUS 4 (.1) AT4G21750 71 / 2e-12 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002037 [exp] 1327 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10037568 [exp] 1263 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 1173 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10023357 [exp] 1042 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1040 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10021470 [exp] 1039 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1039 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10031892 [exp] 99 / 3e-21 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10037554 [exp] 91 / 2e-18 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237500 [exp] 1404 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1387 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.001G188800 [exp] 1295 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1279 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.001G372300 [exp] 1102 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1094 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1031 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G211300 [exp] 1008 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.003G052400 [exp] 90 / 4e-18 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.004G020400 [exp] 72 / 9e-13 AT4G04890 1185 / 0.0 protodermal factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08670 [flax] [poplar] MEKHLA MEKHLA domain CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10011616 pacid=23150934 polypeptide=Lus10011616 locus=Lus10011616.g ID=Lus10011616.BGIv1.0 annot-version=v1.0 ATGGCCGTGACATCAGCAAACAACAGTAGCGGGAGCAGCGGCGGAAGAGGAGGAAAGAATAATAATAATAATATGGGGGGAGGAGGAGGAGTGATGGACA ACGGCAAGTACGTCAGGTACACGCCGGAGCAGGTGGAGGCGCTGGAGAGGCTATACCACGAATGTCCAAAACCAAGCTCCTTACGCCGCCAGCAGCTAAT CCGAGACTGCCCAATCCTGTCCCACATAGAGCCAAGGCAAATCAAGGTCTGGTTTCAGAACCGGAGATGCAGGGAGAAGCAGCGCAAGGAGGCGTCCAGG CTACAAGCTGTGAATCGGAAGTTGACGGCGATGAACAAGCTGCTGATGGAAGAGAATGACCGGTTACAGAAGCAGGTTTCTCATTTGGTGTACGAGAACA CTTTCTTCCGTCAGCATACCCCTACTCCTCCTCCTCCCCTGACGACGACTGATACAAGTTGTGAATCGGTGGTGACGACGAGCGGGCATCAGCGTGATGC GGCCACCCCTGCTGGACTTTTGTCGATTGCAGAGGAGACTTTAGCAGAGTTTTTATCAAAGGCGACTGGGACTGCTGTCGAGTGGGTCCAAATGCCTGGG ATGAAGCCTGGTCCGGATTCCATTGGAATTGTTGCTATTTCTCATGGTGGCAATGGCATTGCAGCTCGTGCTTGCGGCCTTGTCGGTCTAGAACCCACAA GAGTAGCTGAAATCCTTAAAGATCGGCCATCGTGGTATCGTGATTGCCGCGCAGTTGAGGTTCTAAATGCAATGTCCACTGGGAATGGTGCAACTATTGA GCTCCTTTACATGCAGCTCTATGCACCTACCACCTTAGCACCCGCTCGCGACTTCTGGTTACTGCGTTACACTTCTGCTCTAGAGGACGGTAGCCTTGTG GTTTGCGAGAGATCGCTTAACAATACTCAGAATGGTCCTAGCATGCCACCTACTCATCATTTCGTTAGAGCACAGATGCTGCCTAGTGGATATTTGATTA GGCCTTGTGACGGCGGTGGATCAATTATCCATGTAGTCGATCATTTGGATCTTGAGCCTTGGAGCGTACCTGAAGTCCTCCGGCCACTTTATGAGTCGTC AATTCTGCTAGCTCAGAAGACAACAATGGCGGCCTTACGGCATTTGAGACAGATATCTCAAGAAGTTTCTCAGCCAAATGTGCATGGTTGGGGGAGAAGG CCTGCAGCTCTACGTGCTCTTGGTCAGAGACTAAGCAAGGGATTCAACGAAGCAGTGAACGGTTTTAGTGATGAAGGGTGGTCTGTGTTGGAAGGTGATG GAATTGATGATGTAACTCTTCTCGTGAACTCATCTCCTAGCAAAATGATGTGTTTGAATTTCGCATATGCTAACGGATTTCCAGCTATGAACAACGCGGT GCTCTGTGCAAAAGCATCTATGCTACTTCAGAATGTGCCACCAGCTGTATTGTTGAGGTTCTTGCGTGAGCATCGGTCCGAATGGGCAGACAGTGGTATT GATGCATATGCAGCAGCTGCTGTGAGAGCTGGACCATGTGGTGGTTTGCCAGTAGTCTCTGGAGCTGGGAATTTCGGGGGACAGTTCATGGAGGTGATTA AGCTTGAGAATATGGGGTATCGTGAAGACATGATGATGCCTGGTGACATTTTTCTCTTGCAAGTAGGTGTTGAAAAATGCTACTTGCCCTTCTCACTTCC AAATTGCTTGGCCCTAGCTCATACTATTGCTTATGTGCAGCTTTGCAATGGAGTGGATGAGAATGCTGTTGGCAACTGTGCTGAACTCATGTTTGCTCCA ATTGATGCTTCATTCTCTGATGATACGCCTATTATCCCCTCGGGTTTTCGAATCATTCCCCTGGATCCAGGCATGGATGCAACTAGTCCAAACCGGACGC TGGATCTGGCATCTGCTCTTGAAGTTGGAAGACCTTCAGGAAACAAAGCATCTGGGAGTGTTGCAGGACAAAGTGGAAATAGTAGTAGTACAAAGTCAGT GATGACAATAGCATTCCAGTTTGGATTCGAGATGCATCTCCAAGAGAATGTAGCATCGATGGCTAGGCAGTATGTCAGAAGTATTATAGCTTCAGTTCAG AGGGTGGCAATGGCTCTCTCCCCTTCCGGTTTCGGTTCTCAGCCCGGTTTACGCACCCTACCTGGAAGCCCCGAGGCACTCACACTCGCTCGCTGGATAT CCCAAAGCTATAGCTGCTATCTAGGTGCTGAACTTCTGAAATGTGAAGCAAATGAATCGGTTCTGAAAGCTCTCTGGCATCAATCGGACGCGATATTGTG CTGCTCTTTGAAGGCTGTGCCAGTATTCACATTTGGAAACCAGGCAGGATTAGACATGCTTGAGACAACTATGGTGGCACTTCAAGACATTAAACTGGAG AAGATATTTGATGAGAATGGGAGGAAGCATTTGTGTTCTGAGTTCCCACAAATAATGCAGCAGGGATTCATGTGCCTTGAAGGAGGGGTTTGCATGTCAA GCATGGGGAGGCCAGTGTCATATGAACGAGCAGTTGCATGGAAAGTGTTGAACGACGACGAAGCTGCTCATTGCATTTGCTTCATGTTTGTCAATTGGTC TTTTGTCTGA
AA sequence Show only first row Show all	>Lus10011616 pacid=23150934 polypeptide=Lus10011616 locus=Lus10011616.g ID=Lus10011616.BGIv1.0 annot-version=v1.0 MAVTSANNSSGSSGGRGGKNNNNNMGGGGGVMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCPILSHIEPRQIKVWFQNRRCREKQRKEASR LQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTPTPPPPLTTTDTSCESVVTTSGHQRDAATPAGLLSIAEETLAEFLSKATGTAVEWVQMPG MKPGPDSIGIVAISHGGNGIAARACGLVGLEPTRVAEILKDRPSWYRDCRAVEVLNAMSTGNGATIELLYMQLYAPTTLAPARDFWLLRYTSALEDGSLV VCERSLNNTQNGPSMPPTHHFVRAQMLPSGYLIRPCDGGGSIIHVVDHLDLEPWSVPEVLRPLYESSILLAQKTTMAALRHLRQISQEVSQPNVHGWGRR PAALRALGQRLSKGFNEAVNGFSDEGWSVLEGDGIDDVTLLVNSSPSKMMCLNFAYANGFPAMNNAVLCAKASMLLQNVPPAVLLRFLREHRSEWADSGI DAYAAAAVRAGPCGGLPVVSGAGNFGGQFMEVIKLENMGYREDMMMPGDIFLLQVGVEKCYLPFSLPNCLALAHTIAYVQLCNGVDENAVGNCAELMFAP IDASFSDDTPIIPSGFRIIPLDPGMDATSPNRTLDLASALEVGRPSGNKASGSVAGQSGNSSSTKSVMTIAFQFGFEMHLQENVASMARQYVRSIIASVQ RVAMALSPSGFGSQPGLRTLPGSPEALTLARWISQSYSCYLGAELLKCEANESVLKALWHQSDAILCCSLKAVPVFTFGNQAGLDMLETTMVALQDIKLE KIFDENGRKHLCSEFPQIMQQGFMCLEGGVCMSSMGRPVSYERAVAWKVLNDDEAAHCICFMFVNWSFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	0	1
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10037568 [exp]	1.0	0.9728
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	2.2	0.9667
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	2.8	0.9713
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	4.5	0.9673
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	5.7	0.9684
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	6.0	0.9622
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	8.3	0.9334
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	10.9	0.8932
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	11.5	0.9369
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10039610 [exp]	12.4	0.9523

Compare expression of checked genes

Lus10011616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.