Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11640 264 / 2e-88 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237600 [exp] 300 / 8e-103 AT5G11640 295 / 2e-101 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011619 pacid=23150918 polypeptide=Lus10011619 locus=Lus10011619.g ID=Lus10011619.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGCTTCGCAGCGGCTTGAATGCTTTGGGATTCCTTGATAAAATGGTGTCGGAACCACACTATCTCTTCCATTTCTTAGCTTTCTTCTCTT ACTTTGTGGTTCGCACCTCCTCCTCCCAACTCCTCTCCCCTTCAATCTCCCTCCATCTCCTGCGTCGGGAGATTCAAGCCCTTCTTGGTTTTTCCGTTTT AGCTGCAATCAAGTTGGTGAAAGTGGAAACGTGGGAGGGTTTTATCGCTGATACCCTCTTCTATGCCAAGATATTTCTTATTGCCATTTCATTGATTTTG GATTACCACTTGACACTTTGGTACGCGGTGCTGTTTTCAGTACAAAATCAGTCAACTTCTCTTAATATTTTTGGTGGATATTGTGCTGTTCACTCTTCAT TGGAAGGGTCATTGACTGTGCAACACCATTCTGTATTTGCAGCCATATATCTCTTAGCACAGCAGCCTGCCTTTGAAGAATTAGGTGAAGTGAATAGGTT GACACCTCTTCAGTTGGAAACCTTACTTACAGAGGGGCATACATCAAGATACTGGTTGGTAGAGTTTCGTGCGCAATGTTCCTCTACTTGCATACGTGCT AGCCGTTGCTTTCCTGAACTCTCTGTCACATATTCAAACAAGAGCTTATCTTTTGGAATAGTTGATCTTGGGCTATTCCCAAATGCTGCAGAAAGATTTG GAATATCGCTTAATGGAGGAATGAACCAGCTTCCTACCTTTATATTATTCGATAATGCAACTGAAATGGCACGCTATCCAGAATGGGGCTTTGAATCAAA GACTCCTTACCCTCCTCTAACTAAGGGACGTATCGTACGACATTTTGATCTTGATAGGCTCCTCCTTGAGTACGTGAATGGCAAATAG
AA sequence Show only first row Show all	>Lus10011619 pacid=23150918 polypeptide=Lus10011619 locus=Lus10011619.g ID=Lus10011619.BGIv1.0 annot-version=v1.0 MEKKLRSGLNALGFLDKMVSEPHYLFHFLAFFSYFVVRTSSSQLLSPSISLHLLRREIQALLGFSVLAAIKLVKVETWEGFIADTLFYAKIFLIAISLIL DYHLTLWYAVLFSVQNQSTSLNIFGGYCAVHSSLEGSLTVQHHSVFAAIYLLAQQPAFEELGEVNRLTPLQLETLLTEGHTSRYWLVEFRAQCSSTCIRA SRCFPELSVTYSNKSLSFGIVDLGLFPNAAERFGISLNGGMNQLPTFILFDNATEMARYPEWGFESKTPYPPLTKGRIVRHFDLDRLLLEYVNGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11640			Thioredoxin superfamily protei...		Lus10011619 [exp]	0	1
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	4.9	0.8055
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	6.8	0.8014
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	8.8	0.7908
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	9.8	0.7843
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	11.5	0.7702
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	11.6	0.7798
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	13.0	0.7313
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	13.1	0.7652
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	13.3	0.6924
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	20.0	0.7214

Compare expression of checked genes

Lus10011619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.