Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20480 156 / 8e-46 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 154 / 4e-45 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G63380 147 / 3e-42 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 145 / 6e-42 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 137 / 4e-39 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 135 / 4e-38 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 128 / 2e-35 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 120 / 1e-32 4CL5 4-coumarate:CoA ligase 5 (.1) AT3G21240 114 / 2e-30 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 110 / 5e-29 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038667 [exp] 252 / 4e-82 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 233 / 5e-75 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 147 / 6e-42 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10036994 [exp] 144 / 2e-41 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 142 / 2e-40 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 142 / 2e-40 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002791 [exp] 142 / 2e-40 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 137 / 9e-39 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015999 [exp] 135 / 4e-38 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031500 [exp] 165 / 4e-49 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 164 / 1e-48 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 150 / 1e-43 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.012G095000 [exp] 149 / 4e-43 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 148 / 5e-43 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 147 / 2e-42 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.015G092300 [exp] 146 / 4e-42 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 144 / 2e-41 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 140 / 3e-40 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 140 / 3e-40 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10011621 pacid=23150919 polypeptide=Lus10011621 locus=Lus10011621.g ID=Lus10011621.BGIv1.0 annot-version=v1.0 ATGGCGCCCTACGCACGTGGGGAGCTGTGGGTGAAGAGCCCGACGGTGATGAAGGGGTACCTGAGGAATGAGGAGGCGACGGCGGAAGCGGTTGATAAGG AAGGGTGGTTGAGGACTGGGGATCAGTGTTATTTCGACGGAGAAGGGGTTTTTTATGTTGTTGATCGGATCAAGGAGCTGATCAAGCATAATGGGTATCA GGTGGCCCCGGCGGAACTGGAAGCGATACTGTCAAGACTTCCTCAAGTAATGGACGCTGCAGTGATACCAGTTAAAGATGCGGCGTCGGGAGAAATACCA ATGGCGTATGTTGTCGGAGCTTCCGGCGGTGAAGCAGGACTCACTGAACATCAACTCTGTTGGGGCGCTAGCGGAAATGTAGCGGAATTTAGGATCGAAA AGATAGTATTTTGA
AA sequence Show only first row Show all	>Lus10011621 pacid=23150919 polypeptide=Lus10011621 locus=Lus10011621.g ID=Lus10011621.BGIv1.0 annot-version=v1.0 MAPYARGELWVKSPTVMKGYLRNEEATAEAVDKEGWLRTGDQCYFDGEGVFYVVDRIKELIKHNGYQVAPAELEAILSRLPQVMDAAVIPVKDAASGEIP MAYVVGASGGEAGLTEHQLCWGASGNVAEFRIEKIVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	0	1
					Lus10000363 [exp]	2.2	1.0000
					Lus10003285 [exp]	3.9	1.0000
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	4.0	1.0000
					Lus10004996 [exp]	5.3	1.0000
					Lus10025781 [exp]	6.3	1.0000
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	6.9	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	7.5	1.0000
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	7.5	1.0000
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015284 [exp]	10.0	0.9536
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	10.8	1.0000

Compare expression of checked genes

Lus10011621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.