Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040024 [exp] 160 / 2e-49 ND / Lus10029545 [exp] 158 / 5e-49 ND / Lus10026728 [exp] 155 / 1e-48 ND / Lus10039941 [exp] 149 / 6e-45 ND / Lus10027695 [exp] 153 / 9e-44 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10029250 [exp] 143 / 1e-43 ND / Lus10005712 [exp] 146 / 3e-43 ND / Lus10008307 [exp] 137 / 2e-37 AT5G15070 1662 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10033050 [exp] 129 / 4e-37 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011622 pacid=23150922 polypeptide=Lus10011622 locus=Lus10011622.g ID=Lus10011622.BGIv1.0 annot-version=v1.0 ATGGATGATGTCCACGAATTGTACCATGATGCTGATGCTAATTGTGCCACTGACCATTTCATCGTCGAGGACCTCTTGGACTTCTCCAACGAAGACGACT CCTCCGCCATCCTCACCCTCGACGCTCCTACTGCCGCTTTCGATACCAACACCCACTCCTCCCACCTCACTGCCTCCACCCTCACTGTCGTTGATAGCTG CAATTCCTCCTCCTTCTCCGCCTCCGACCCTCCTCATTTCTCCGACGTCCACTTCTCCAACGACCTCTGCGTTCCGGAAACTGATAATGAGTTCTTCACA CACACAATTAGAGAAGACACTATCTTGGGACCAGAACTGCCTGTGCCAAAAGACTTCTCAAGATTTATCATTGGATTAGGGGTAGTTGAGGATACCTGTG TCGACACACCATACTACCTCTTCCCTCCTCAAGCAGTGCCGACCAAGAAGAGATTGCCACTTCAAGGCATTAATTGGAACTCACAACCACTTCAACGGCT TCTCCATCAATCCCTAAGGGTGCTACTTGGAATTCAACTCCAATCCTTGAAGAAACTAATGGAATTCAAGGAGGTTCTGAGTTGGGCAGCTTAA
AA sequence Show only first row Show all	>Lus10011622 pacid=23150922 polypeptide=Lus10011622 locus=Lus10011622.g ID=Lus10011622.BGIv1.0 annot-version=v1.0 MDDVHELYHDADANCATDHFIVEDLLDFSNEDDSSAILTLDAPTAAFDTNTHSSHLTASTLTVVDSCNSSSFSASDPPHFSDVHFSNDLCVPETDNEFFT HTIREDTILGPELPVPKDFSRFIIGLGVVEDTCVDTPYYLFPPQAVPTKKRLPLQGINWNSQPLQRLLHQSLRVLLGIQLQSLKKLMEFKEVLSWAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011622 [exp]	0	1
					Lus10005393 [exp]	4.1	0.9649
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	5.5	0.9615
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	6.2	0.9635
AT1G45688			unknown protein		Lus10029743 [exp]	6.5	0.9548
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	6.7	0.9554
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	9.3	0.9290
AT1G06930			unknown protein		Lus10009929 [exp]	13.3	0.9556
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	15.0	0.9446
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	15.9	0.9541
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	15.9	0.9444

Compare expression of checked genes

Lus10011622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.