Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 49 / 2e-07 MATE efflux family protein (.1) AT1G73700 48 / 4e-07 MATE efflux family protein (.1) AT2G34360 48 / 4e-07 MATE efflux family protein (.1) AT1G15150 42 / 6e-05 MATE efflux family protein (.1) AT1G71140 42 / 7e-05 MATE efflux family protein (.1) AT1G15160 42 / 8e-05 MATE efflux family protein (.1) AT5G19700 40 / 0.0002 MATE efflux family protein (.1) AT2G04090 39 / 0.0008 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030721 [exp] 143 / 2e-44 AT1G20870 69 / 4e-14 HSP20-like chaperones superfamily protein (.1) Lus10017380 [exp] 110 / 2e-31 ND / Lus10009214 [exp] 83 / 2e-21 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1) Lus10009688 [exp] 83 / 2e-19 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 71 / 3e-15 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017998 [exp] 59 / 8e-11 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 57 / 3e-10 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10019492 [exp] 45 / 4e-06 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10001318 [exp] 43 / 3e-05 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 56 / 8e-10 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 53 / 9e-09 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.006G171240 [exp] 52 / 1e-08 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.006G170900 [exp] 52 / 1e-08 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.017G120600 [exp] 45 / 3e-06 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.010G116900 [exp] 44 / 9e-06 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G094900 [exp] 43 / 2e-05 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.010G117000 [exp] 43 / 2e-05 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G094800 [exp] 43 / 3e-05 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120500 [exp] 43 / 4e-05 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011624 pacid=23150933 polypeptide=Lus10011624 locus=Lus10011624.g ID=Lus10011624.BGIv1.0 annot-version=v1.0 ATGTTCGTGGGGCATCTGGGTGAACTAAGCTTGTCCTCTGCTTCCATGGCTACTTCTTTCGCTACTGTCACTGGCTTCAGCTTACTGCATATACCTCTAT GGTTTACGAGTCAGCAGAGAGCTTTCCAAGGTGAGAAACATGTGGAGCTGGAGGTTGGGGACAAGGCTTGGACAGTGAATCTCCAATGCAGAAGTGCCAC TGCCAAAGTGTCCACTTCCGCTCTCGAAGCATCCAATGAAGCGGCGACCTCAACAAAACTCGAAGCCTCTCTGACACAACTTCAAGATATGGACAAGCAT ATTCAGGATAATTCGGCTACCCTTAGTAATGAAATATCCTCTGTCTTGGATCGCCTTCTCTCAAAAAGCTTGGAGAATCCATGGATATCAACACCTCTCA ACACAAAGACTTGGATAATGGTCTCCTTGGATCTCAACAAGTAA
AA sequence Show only first row Show all	>Lus10011624 pacid=23150933 polypeptide=Lus10011624 locus=Lus10011624.g ID=Lus10011624.BGIv1.0 annot-version=v1.0 MFVGHLGELSLSSASMATSFATVTGFSLLHIPLWFTSQQRAFQGEKHVELEVGDKAWTVNLQCRSATAKVSTSALEASNEAATSTKLEASLTQLQDMDKH IQDNSATLSNEISSVLDRLLSKSLENPWISTPLNTKTWIMVSLDLNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10011624 [exp]	0	1

Compare expression of checked genes

Lus10011624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.