Plant FIBer expression Database

Lus10011625 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32910 875 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038723
[exp]
1329 / 0 AT4G32910 913 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G044300
[exp]
689 / 0 AT4G32910 610 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07575 Nucleopor_Nup85 Nup85 Nucleoporin
Representative CDS sequence
>Lus10011625 pacid=23150926 polypeptide=Lus10011625 locus=Lus10011625.g ID=Lus10011625.BGIv1.0 annot-version=v1.0
ATGCCCAGAATAGCATCGGACTCCGGCGGAGGGGCGCCCGACTCGGTCAACGGAGTACTGGTCCCTTATTTGCCAGATTCCCACGTTTCCGTAGTCTACC
CTCTCCGCCATGGTCTAATCCCTCCCATCTCTCGCGTCTCCATTTCCTGGGGCCGCGGAAACTCCCTCCGCGTCTCCGTTTTCCAGGAGCCATCTTCGTC
TACCGAAGCCGAGGTTGGAGGGCAAGTGGTGGAGGTGACTCTTGGCAAAAGCAGAGACGGAGAGATCACTGACGCTCAATGGCGGAAGATAGCCTACGGC
TCAGTCTCCCCTTTCGCACTTCTCCAGAGCCGCAAAAATTCCTCTTCCAGCTTCTCTAAAATGCAATTGTCTCCCTCTCCTTACCATCTTGAGTGGTGGG
AACATGTAATGGAGTACAGCAAGGACATAAGTTCGCTTCTCGGGAATCCAAAATCACTGGTTGCGCCACTCATCGAAGATCCGAGGGAGGTTGTAAAGAG
TGATGATGAGCCAACCTGTTTAAAGGGAGCATGGGAGCTGATGGAAATGTTCTATGTGGATAAGTTATCGCAATCATGGTTGCCTGAACGCCTGGTTGAT
TGGTTAGCTGATTATGATAGCCTCTTATCTGTCTCTCTGCCAACCGTTCACTTAAAGCTTGTGGAGTTTCAAGGACAAATTGTCACCTTACAGGTTATTG
AGGATGATCATAAATATTGGAGCTTGGTATCATCAGCACTAGCTGTTGGTTGGTTAGAGATAGGGACAGAGAATGGTCTAGTAGAGGCTGTTGCTGTTCT
TATTTCCAAGATGCCACGTATGCGACCGGTTATGGATAATGGAAAGCTTGGTGAGTGCTTCAATGCCAAACCTGATTATGTGAAGGCATGGGAAAGATGG
CGTGCACAGATAACTAAATTAAATTCTAGTGCATTCTGGGTTCAGTGTGAACATCATCAGACTCGAGAAGGGTTGAAAAATCTACTCCAGATCATGCTTG
GAAATGTTGACGTTCTCTGCTCTGCTACATGTCATTGGATAGAATTATACGTGTCTCACTTCCTCTATATAAGACCTTTCACTTCTGGACTTGAAAGCAT
GTATAGCTTGGCCCAGAAATGTATTCAGCTGAAACAGGCATCCAATCCCCATAAGTTGATGCGACTTATGATTGGAATTCTTGGAGAGAATAATGAGGTT
GTGTTAGCAGAATGCTCAAGAGGATTTGGTCCTTGGATGGTAGCCCATTCCATGGAACTTTTGAGTGCCTTGAGCAATGAAGCAGATATGCTTTTACATG
AGGATCAGGAAAACTTAGGTGGGATCAGTTTGGAGGAGCTCCATCGGCTTGCTTATGCTCAAGTTCTATCTTCTCATGTGTTAACTTGGCAAATTGCTCC
AATTTATTTGTCATCGTGTATGAGGCAGGGCATGGGTTTACTTGAAATTTTATTGCTCAAGCAGTCAGTTCTGGATGATCGGCTGTTGCTGAAGAACCTG
GAGATTTGCCGGCTTTATGAACTTGAGTTTGTCAGTTCACACCTAATGGAGATTTCAGGAGTGTTCCACTGGAAGCATGGCAGGAAAGGAAGTGCTATCT
TTTGGCTTCGGCAAGCCCAGGATGAGGTTCGCCTTAACAGGATTGCTAAGCAGTTGTTTGATTCTGTTGGGAAGTCCATCTCTGGTGAAAGTTTCAAGCA
ATGGGAAGGGCTGATTGAATTGTTGGGTTCAGAAGCTAAGCCAGCTGGGGGTCTTGATTTCCTGCACAAGTACAGAGATTTCAAGAAATGCCTTGAGCAG
GCTGACACTGGAAAAGATGCAGGTGCTGTTCGTCAAGCAGTGGAATCACTTATGTCGCTTATGAGAAACGCCTCTACGCCACAACGTTTCTGGTTGCCCA
TTCTATATGATGCGGTAAAGCTACTAAGGTGGGAGGAGAGACCTCTTGTAAATGTAGCACAGACAAACCTGCTGTTGAACAAACTGCAAGAGTTGTCCGT
TGGAAAACTGCGTCCAGATTACATAGTACCAGAGTTGCCTCCTCATGCATTGAACCATGTTAGATATGCGCTAGCTACTAATCTTGGACGTGCCATAGTT
GATGAATCATGA
AA sequence
>Lus10011625 pacid=23150926 polypeptide=Lus10011625 locus=Lus10011625.g ID=Lus10011625.BGIv1.0 annot-version=v1.0
MPRIASDSGGGAPDSVNGVLVPYLPDSHVSVVYPLRHGLIPPISRVSISWGRGNSLRVSVFQEPSSSTEAEVGGQVVEVTLGKSRDGEITDAQWRKIAYG
SVSPFALLQSRKNSSSSFSKMQLSPSPYHLEWWEHVMEYSKDISSLLGNPKSLVAPLIEDPREVVKSDDEPTCLKGAWELMEMFYVDKLSQSWLPERLVD
WLADYDSLLSVSLPTVHLKLVEFQGQIVTLQVIEDDHKYWSLVSSALAVGWLEIGTENGLVEAVAVLISKMPRMRPVMDNGKLGECFNAKPDYVKAWERW
RAQITKLNSSAFWVQCEHHQTREGLKNLLQIMLGNVDVLCSATCHWIELYVSHFLYIRPFTSGLESMYSLAQKCIQLKQASNPHKLMRLMIGILGENNEV
VLAECSRGFGPWMVAHSMELLSALSNEADMLLHEDQENLGGISLEELHRLAYAQVLSSHVLTWQIAPIYLSSCMRQGMGLLEILLLKQSVLDDRLLLKNL
EICRLYELEFVSSHLMEISGVFHWKHGRKGSAIFWLRQAQDEVRLNRIAKQLFDSVGKSISGESFKQWEGLIELLGSEAKPAGGLDFLHKYRDFKKCLEQ
ADTGKDAGAVRQAVESLMSLMRNASTPQRFWLPILYDAVKLLRWEERPLVNVAQTNLLLNKLQELSVGKLRPDYIVPELPPHALNHVRYALATNLGRAIV
DES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32910 unknown protein Lus10011625
[exp]
0 1
AT5G06160 ATO ATROPOS, splicing factor-relat... Lus10019024
[exp]
1.0 0.8924
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Lus10017026
[exp]
2.0 0.8632
AT4G22285 Ubiquitin C-terminal hydrolase... Lus10003795
[exp]
2.4 0.8655
AT1G04790 RING/U-box superfamily protein... Lus10011747
[exp]
4.2 0.8581
AT2G38280 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5... Lus10037223
[exp]
4.7 0.8670
AT2G47620 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3... Lus10032555
[exp]
7.2 0.8319
AT2G36740 ATSWC2 sequence-specific DNA binding ... Lus10020396
[exp]
7.3 0.8160
AT3G52030 F-box family protein with WD40... Lus10005328
[exp]
8.1 0.8221
AT4G15850 ATRH1 RNA helicase 1 (.1) Lus10028117
[exp]
8.5 0.8325
AT3G10530 Transducin/WD40 repeat-like su... Lus10035740
[exp]
9.0 0.8417

Lus10011625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.